Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04643 ATGTCAATTTTTCATTCCGTTTTCTATGGTTTAGTTGTAGTTTTCATTCTTCTACAGAATCCCAGTTCAACACAATGCCATACCAAGGGAATCAGACCCAGGCCTGGGAATGGTTTATCTACCAACATGACCAGAGTTCAATTTTCAGAAGAACAGTTCATGAAATGGGTGCGATTTGTGGGTGGCCTCAAACATTCTGTCTTTAAGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTCTGCATGTTTCTAAGAAGTCTGGCAAAGGAGGTTTTTCGTCAATCCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTCCATGCAGGGGTTTATACGGAGAAAGTTAACGTCCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAACACCATTGTTCAATGGGGTGACAGTGCTCAAAGCCAGCCATTAGGAACCTACGGTTCTGCAACTTTTGCAGTGAATTCACCTTTTTTCGTAGCCAAGAATATCACATTCAAAAACACTGCCCCGATTCCAGCACCGGGAGCAGTAGGAAAGCAAGCAGTGGCATTAAGAATTTCAGCAGACAATGCAATATTCCTAGGCTGCAAATTCTTGGGAGCACAGGACACGCTCTATGATCATCTGGGTAGGCATTACTATAAGGATTGTTATATCGAAGGCTCTGTAGATTTCATCTTTGGAAACGCTCTGTCTCTCTTTGAGGGATGTCACGTGCATGCAATAGCACAAGTTACAGGGGCCCTAACAGCCCAAGGAAGGAGCAGCTTATTACAGGACACGGGATTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGATAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAGTACAAATGCACAGGAGCAGGAGCAAGGTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCATTTATTTCCCTTAGCTACATCGATGGCTCTGAATGGATCAATCTTTCTTTTTGA 1131 0.4447 MSIFHSVFYGLVVVFILLQNPSSTQCHTKGIRPRPGNGLSTNMTRVQFSEEQFMKWVRFVGGLKHSVFKTAKNKLFPSHTLHVSKKSGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNVPPLKSFITIQGAGADNTIVQWGDSAQSQPLGTYGSATFAVNSPFFVAKNITFKNTAPIPAPGAVGKQAVALRISADNAIFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGARYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04643 376 Gene3D - 78 375 IPR012334 -
Vimu11g04643 376 FunFam Pectinesterase 77 374 - -
Vimu11g04643 376 Pfam Pectinesterase 85 368 IPR000070 GO:0030599|GO:0042545
Vimu11g04643 376 SUPERFAMILY Pectin lyase-like 77 374 IPR011050 -
Vimu11g04643 376 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Vimu11g04643 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 73 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04643 Vimu-Chr11 66958997 66961893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04643 86 375 Carbohydrate Esterase AT1G05310 48.322 6.04e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04643 K01051 - gmx:100802832 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04643 11 66958997 66961893 Vimu11g04643 11 66958997 66961893 ECH