Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04640 ATGTCGTGGCAAACTTACGTCGACGACCACCTTCTCTGCGAAATTGAAGGAAACCACCTAAGTCACGCCGCTATCATCGGCCAGGACGGCAGCGTTTGGGCTCAGAGCTCCGGCTTCCCTCAGTTAAAACCTGAGGAAGTATCTGGGATCTTGAATGACTTTAATGAACCTGGAACACTTGCTCCCACTGGATTGTATATTGGTGGCACTAAATATATGGTCATCCAAGGTGAACCCGGCTCTGTCATTAGAGGCAAGAAGGGTCCTGGTGGTGCTACTGTGAAGAAGACCGGTTTGGCCTTGGTCATTGGCATTTATGATGAGCCCATGACTCCGGGTCAATGCAACATGATAGTTGAAAGGCTTGGTGATTATCTCATTGAACAGGGTCTCTGA 396 0.4899 MSWQTYVDDHLLCEIEGNHLSHAAIIGQDGSVWAQSSGFPQLKPEEVSGILNDFNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKKGPGGATVKKTGLALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04640 131 FunFam Profilin 1 131 - -
Vimu11g04640 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Vimu11g04640 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Vimu11g04640 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Vimu11g04640 131 CDD PROF 2 130 IPR005455 GO:0003779
Vimu11g04640 131 SMART prof_2 1 131 IPR005455 GO:0003779
Vimu11g04640 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Vimu11g04640 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Vimu11g04640 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Vimu11g04640 131 Pfam Profilin 1 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04640 Vimu-Chr11 66931186 66932615 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04640 1 131 Cytoskeleton Gene Families AT4G29350 77.863 4.02e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04640 K05759 - gmx:547670 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04640 11 66931186 66932615 Vimu11g04640 11 66931186 66932615 ECH