Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04632 ATGGAGAACACCTGGATCCTCACTTTTCATCTTCTTCTTCTTCTCCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATTAATGTGGGTGTCGGTGTTGGTGGAAGAGGTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGTAGTGGTGGTAACACCGCAGGACCCTCTGGATCCTCAGCGTCAAACCTCAACAATGCTTTCACGGCCCTCCAAGCTTGGAAATCTGCCATAACTGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTATCTTCTGCTCGAATTCTCAGGACGACAATGGAATTGCCACAACAGCATCGACCGAATCTTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTCCAAGGGACTCTTGTCAAAGAACTCTCTTTGCTATCAGATATCACCCTTTTCCATCTCAACACCAACAGGCTTTCTGGCTCAGTTCCCGAGTCTTTCAGAGACCTCACTTCCCTACAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGACCTTTTCCCACTGCCATTCTATCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACAACTTCTCAGGGCAACTTCCCGATGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAATTTTGGGGGTGAAATTCCAGAGAATCTGGGAAATTCACCTGCCTCGGTGATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAGGGAGTAGGGATCTTCACCGAGATGCAAGTGTTGGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAGGATATAGAGGTTCTCAATTTGGCAAATAACAAGCTCTCAGGGGAATTATCTGATGTGGTGTGCTCCTTGAGAAGCCTATTGAATCTAACCGTTGCTCACAATTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATACCTGGAAGGAATATGCAAAGACCACAACCAGAGTGTTCTGGGATCCCTGGAGGTAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAGCCTCTTGTTTGTGCAACTCTGGCTGCAACTTTGTCCAACCACGCAAACTCACCTTCCTCTTCTCCCTGA 1266 0.4668 MENTWILTFHLLLLLLLLHSNAAKGAINVGVGVGGRGGIGVGIGIGNGGSGGNTAGPSGSSASNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGIFCSNSQDDNGIATTASTESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNTNRLSGSVPESFRDLTSLQELDLSNNQLSGPFPTAILSMPSLVYLDLRYNNFSGQLPDELFNKKLDAIFLNNNNFGGEIPENLGNSPASVINLANNKLSGSIPFSFGFMSSRLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLMGHLPDTMSCLQDIEVLNLANNKLSGELSDVVCSLRSLLNLTVAHNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPQPECSGIPGGSLNCLRIPAPKPLVCATLAATLSNHANSPSSSP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04632 421 Gene3D Ribonuclease Inhibitor 241 384 IPR032675 -
Vimu11g04632 421 Pfam Leucine rich repeat N-terminal domain 66 104 IPR013210 -
Vimu11g04632 421 FunFam Leucine-rich repeat extensin-like protein 1 69 238 - -
Vimu11g04632 421 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 59 399 - -
Vimu11g04632 421 PRINTS Leucine-rich repeat signature 171 184 - -
Vimu11g04632 421 PRINTS Leucine-rich repeat signature 311 324 - -
Vimu11g04632 421 Gene3D Ribonuclease Inhibitor 66 240 IPR032675 -
Vimu11g04632 421 Pfam Leucine rich repeat 150 205 IPR001611 GO:0005515
Vimu11g04632 421 SUPERFAMILY L domain-like 68 360 - -
Vimu11g04632 421 SMART LRR_typ_2 287 311 IPR003591 -
Vimu11g04632 421 SMART LRR_typ_2 168 191 IPR003591 -
Vimu11g04632 421 SMART LRR_typ_2 335 358 IPR003591 -
Vimu11g04632 421 SMART LRR_typ_2 192 216 IPR003591 -
Vimu11g04632 421 SMART LRR_typ_2 144 167 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04632 Vimu-Chr11 66896840 66899260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04632 65 394 Leucine-rich Repeat extension Gene Families AT3G24480 48.512 1.45e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04632 - - gmx:100786358 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04632 11 66896840 66899260 Vimu11g04632 11 66896840 66899260 ECH