Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04631 ATGAAGATCGAGGAATTGGACGACGCGGAGTGTAGTATAGACGAACAAGAGAAGTACGAGAAGCAGATGGTCAGCGTTGAAGTGAAGAGAGCGTTGGTGGGCGCAGGTGCTCGGATCCTGTTCTATCCCACACTCTTGTATAATGTGCTTCGTAACAAAATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCTTTCCCCAAGGACGTTCCTCTTTTGAAGAGCCTCGGTGTGGGTGGTGTGATTACTCTCAATGAGCCATATGAAACCTTGGTGCCGTCGTCGTTGTATCGGGTGAGTGACATCACCTTTCCTTTTCTGAAGGCTCACGGGATTGATCATTTGGTAATTCCCACTAGAGATTATCTCTTTGCCCCCTCGATTGTTGATATCAACCAGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGCAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAGCACATGACACCTGCTGCTGCCCTGGAATATGTGCGGTCTCGACGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAAACTATAACAATCGCAGGCCGTGTCCTTTACCGTACTCCCCCTCTGGGGACGCAGTTCTTATAACCAAAGCGGATCTTGAAGGATATCATAGCACATGTGATGCTGATATGGAGCTGGCTATTGTCCCCAAACTTCCAAGGACTATGCCCATGATTGCAAGATTATCTTGCCTGTTTGCATCCTTGAAAGTATCCGGTAGCAGTGTACCAATGATCAGGCGGCTGCCAGTTTCCGAGTCACGTGCTTGCTAA 879 0.479 MKIEELDDAECSIDEQEKYEKQMVSVEVKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPLLKSLGVGGVITLNEPYETLVPSSLYRVSDITFPFLKAHGIDHLVIPTRDYLFAPSIVDINQAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQNYNNRRPCPLPYSPSGDAVLITKADLEGYHSTCDADMELAIVPKLPRTMPMIARLSCLFASLKVSGSSVPMIRRLPVSESRAC 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04631 292 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 212 IPR029021 -
Vimu11g04631 292 CDD PTPMT1 60 214 IPR044596 GO:0004721
Vimu11g04631 292 Gene3D Protein tyrosine phosphatase superfamily 60 215 IPR029021 -
Vimu11g04631 292 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 206 IPR000387 GO:0016311|GO:0016791
Vimu11g04631 292 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 217 IPR020422 GO:0006470|GO:0008138
Vimu11g04631 292 ProSitePatterns Tyrosine specific protein phosphatases active site. 159 169 IPR016130 GO:0016311|GO:0016791
Vimu11g04631 292 FunFam Dual specificity phosphatase domain protein 60 216 - -
Vimu11g04631 292 Pfam Dual specificity phosphatase, catalytic domain 116 213 IPR000340 GO:0008138|GO:0016311
Vimu11g04631 292 SMART dsp_5 95 214 IPR020422 GO:0006470|GO:0008138
Vimu11g04631 292 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04631 Vimu-Chr11 66885754 66887334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04631 10 280 Protein tyrosine phosphatase (PTP) family AT2G35680 50.313 2.55e-97 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04631 - - gmx:100817410 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04631 11 66885754 66887334 Vimu11g04631 11 66885754 66887334 ECH