Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04630 ATGCTTGGCTGTGGAGTGTTGGACAGGAAAGATAGCAATAGTATCATCAAATCAAAGGCATCAGAAAGGAACAAGTTGAGTTGTGTTAGGAGCTCTGATCTGATAGATGCAAAGCTGGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCAGCAGGAGTGAAGTTTGATCCAACGGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTCGAAGCAAAGAACATCAAATCACACCCTCTCATAGATGAGTTCATTCCCACTATAGAAGGAGAAGACGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGGTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACAAGACCAGTGATGGTCAATGGCAAACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGCAAGAATAGAAAACCCGAAAAGACTAACTGGGTTATGCACCAGTACCATCTGGGTCAGCACGAGGAAGAAAAAGAAGGAGAGCTTGTGGTGTCCAAGATATTCTACCAGACACAACCGAGGCAGTGCAATTGGTCAGATAGAAGTGCCATAACTGGTGAAGCAAGTGGAGAACAACAACCCAACAATAATGGAACAAGAGACAGCGGAAGTGGGAGTTGTTCTTCTAAGGAAGTTCTCACTCACAGAGATGAAATGTCTGCTATCGTTGGACTCCCTCAAATAACAACCTTCAACACTTCCTTGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCGACGGGAAGAGAAGTGCAAGCATCAAGGTCGTGTGAGGAAGTACATGAAGGGCATAATATTGTAGCACATCATCATCATCATCATCAACAACAGCAGCAAAATCAGCATGCGCACCAACAAATAGCAACCACTGCCTTCCATATCAGTAGGCCTTCGCATCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCACGCATCCATCATCCTAGACGACAACGCCTACCATGTCTCAACAATCATGCTTCAAAATGAAAATTTCCAGCAACAGCAGCAGCACCATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCCATTACAAACCAACAAGAGGCTGAATGGTTGAAATACTCTTCTTACTGGACAGACCCTGGCAACCTGCACGATCATCATGAGTAG 1413 0.4565 MLGCGVLDRKDSNSIIKSKASERNKLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNIKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSAITGEASGEQQPNNNGTRDSGSGSCSSKEVLTHRDEMSAIVGLPQITTFNTSLDIQQLKSDHFSFIPFRKSFDEVGIGEASTGREVQASRSCEEVHEGHNIVAHHHHHHQQQQQNQHAHQQIATTAFHISRPSHPISTIISPPPLHHASIILDDNAYHVSTIMLQNENFQQQQQHHHKLGGRSASGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSYWTDPGNLHDHHE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04630 470 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 31 355 IPR044799 GO:0003700
Vimu11g04630 470 FunFam NAC domain-containing protein 73 75 231 - -
Vimu11g04630 470 SUPERFAMILY NAC domain 62 227 IPR036093 GO:0003677|GO:0006355
Vimu11g04630 470 MobiDBLite consensus disorder prediction 243 267 - -
Vimu11g04630 470 Pfam No apical meristem (NAM) protein 67 208 IPR003441 GO:0003677|GO:0006355
Vimu11g04630 470 MobiDBLite consensus disorder prediction 243 269 - -
Vimu11g04630 470 Gene3D NAC domain 75 231 IPR036093 GO:0003677|GO:0006355
Vimu11g04630 470 ProSiteProfiles NAC domain profile. 66 227 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04630 Vimu-Chr11 66874285 66878099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04630 33 459 NAC Transcription Factor Family AT5G56620 54.667 1.62e-140 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g04630 NAM 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04630 - - gmx:100794811 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04630 11 66874285 66878099 Vimu11g04630 11 66874285 66878099 ECH