Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04621 ATGATGTTGGGGGAGACGCACCGCGCAAACCCAACCGTACACGTCCCACCGTGGCCGCTCATCCATGAATCCTCGCCGGAGATCTTTTCACCGTACACCACCAATGCTGATTACTCTCCGTACTCTCTGCAAGAAGCTCTCAGCGCCCTTCAGCACTACGACTCCACTGATGCAGAGTCAGACTCTGATGTTCCTTCCCTGGAATCGGATGTCCCGGTTGACGCCTACTCCTGTGATCATTTCCGCATGTTCGAGTTCAAGGTTCGCAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGCGAGAAAGCTCGCCGCCGTGATCCCCGCAAGTATCACTACTCCGGGTCGGCCTGCCCCGATTTTCGCAAGGGAAGTTGCAAGAAAGGTGACGCATGCGAGTATGCGCACGGAGTTTTCGAGTGCTGGCTCCACCCCGCTCGCTACCGCACTCAACCGTGCAAGGACGGCACCAGTTGCCGCCGGCGCGTGTGTTTCTTTGCCCATACGCCCGAGCAACTAAGGGTGTTGCCGCAGCAGAGTCCACGCAGTGCCGACTCGTACGACGGGTCTCCTCTAAGACACGCGATCGAGTCCTCCAAGACGGCGGCGCCCTTCGTGTCTTCTCCCGGGTCGTTGTCGCCGCCGGTGGAGTCTCCACCTATGTCTCCGATGACTCGTCCCGGGTCTTTGTCTGTTAACGAGATGGTAGCTTCGCTGAGAAACTTGCAACTGGGGAAGATTAAGTCGTTGCCTGCTTCATGGAATGTTATAGGGTCTCCCGGGTTCGGGTCACCCAGAGGACCCGTGATCCGACCCGGGTTCTTCAGTCTTCCTTCGACCCCAACACAGGCTCCGGTTCGCGGTGGGGTGAATTACTTTGACATGTGGGATCAGAGTTGCGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCCGGAAGAAACATAAGAGCGAGGATGTTTGAGAAGTTGAGCAAAGAGAACGTTCTTGACGGGCAGGGTTCGGGTGAGCCCGTGGTCCCGGATGTGGGGTGGGTCTCGGAGCTTGTGAGTCGCTCATTTCATTCTGCCACTGTTCCCTCGGCGTGTATAGAATACGGGGGAGAAGAAAAGGAAGAATGGTAG 1146 0.5777 MMLGETHRANPTVHVPPWPLIHESSPEIFSPYTTNADYSPYSLQEALSALQHYDSTDAESDSDVPSLESDVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGSACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSKTAAPFVSSPGSLSPPVESPPMSPMTRPGSLSVNEMVASLRNLQLGKIKSLPASWNVIGSPGFGSPRGPVIRPGFFSLPSTPTQAPVRGGVNYFDMWDQSCEEEPVMERVESGRNIRARMFEKLSKENVLDGQGSGEPVVPDVGWVSELVSRSFHSATVPSACIEYGGEEKEEW 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04621 381 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Vimu11g04621 381 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Vimu11g04621 381 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 145 IPR000571 GO:0046872
Vimu11g04621 381 MobiDBLite consensus disorder prediction 207 235 - -
Vimu11g04621 381 PANTHER UNKEMPT FAMILY MEMBER 43 357 IPR045234 -
Vimu11g04621 381 Gene3D - 121 184 - -
Vimu11g04621 381 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Vimu11g04621 381 SMART c3hfinal6 155 178 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04621 Vimu-Chr11 66807570 66811128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04621 70 257 C2H2 Transcription Factor Family AT5G12850 50.251 8.24e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu11g04621 zf-CCCH 8.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04621 - - gmx:100808676 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04621 11 66807570 66811128 Vimu11g04621 11 66807570 66811128 ECH