Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04620 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAACGTCAAAAGGGGTCCTTGGTCTCCCGAAGAAGATGAAACCCTCAAAAACTATCTCAAGAAGCATGGCACTGGTGGCAATTGGATTACTCTCCCACAAAAAGCAGGCCTAAAGCGGTGTGGGAAGAGTTGTCGTCTCAGATGGTTGAACTATCTCAGACCTCATATCAAGCATGGAGGTTTCACCGATGAGGAAGACCAACTTAAAACTAACTCTACCAATAGTGCTAAAACCTTCAGTTTCCTAAGGTTACCTGGGAGAACAGACAACGATGTGAAAAACCATTGGAACGCTAAGTTAAAGAAAAAGTTTTTGGTAGCAAACACCAATGCCAGTACTGTCGATACTGTTTGTCCACAGTTCACAACTTCCACTACTCCTCAGTCTCGAGATGAAGACCGTGTCTTCGATCATGAGAACTCAGCCGAGTCTCGTGTCTTGGGTTTGGAGCGGACACACATTCCAGTTCCTTCACCATTGCCCTTAGGATCTAATGTCTCAGGTCTTGGCAGCAGTTGTAGTGTACCATTATCCAATGAAGTTTCAGTCGTTTCAAACTCAACATCCTTTGCGAAACAGGAAAACCAGACTCAATGGTTTGGCTATGATGACGATATTGAAGGTGAAAATGAAGCCCTTTTGCTTGATTTTGTGTACGAAGATCTCTTGCTTAGTAATGGGTTTGTTTCTCAAGAAAAAAGCAGCGAAATTGCCCCATCATTTGGCTAA 759 0.4361 MGRAPCCDKANVKRGPWSPEEDETLKNYLKKHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDQLKTNSTNSAKTFSFLRLPGRTDNDVKNHWNAKLKKKFLVANTNASTVDTVCPQFTTSTTPQSRDEDRVFDHENSAESRVLGLERTHIPVPSPLPLGSNVSGLGSSCSVPLSNEVSVVSNSTSFAKQENQTQWFGYDDDIEGENEALLLDFVYEDLLLSNGFVSQEKSSEIAPSFG 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04620 252 CDD SANT 16 62 IPR001005 -
Vimu11g04620 252 Gene3D - 71 130 - -
Vimu11g04620 252 PANTHER OS09G0431300 PROTEIN 1 144 - -
Vimu11g04620 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vimu11g04620 252 SUPERFAMILY Homeodomain-like 11 106 IPR009057 -
Vimu11g04620 252 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu11g04620 252 FunFam Transcription factor RAX3 7 68 - -
Vimu11g04620 252 Gene3D - 7 68 - -
Vimu11g04620 252 SMART sant 67 112 IPR001005 -
Vimu11g04620 252 SMART sant 13 64 IPR001005 -
Vimu11g04620 252 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04620 Vimu-Chr11 66804260 66805397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04620 1 127 MYB Transcription Factor Family AT5G57620 65.385 1.04e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g04620 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04620 K09422 - gmx:778160 261.536