Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04612 ATGGGGAGGAGAATTCTGAACGATGCCTTGAGGAGTATGGTGAATGCAGAGAGGAGAGGGAAAGCTATGGTGGAACTCAAGCCAATTTCCACTCTAATTTGGCTTAAATTCCTAATAGGTTATATCAAAGACTTTCAAGTCTATGATCCGCATAGAGTAGGGAGGATAACGGTTGAACTACAAGGTAGGATTAACGATTGCAAGGCTCTTACACACCGAAAAGATATCAAGGCAAGGGATCTTGAAGCCTACAGATTGCAAACTCTTCCTACTCATCAGTGGGGTTATGTTGTGATTACAACTCCCGATGGTGTTTTGGATCATGAAGAAGCCATTAAGAAGAATGTAGGCGGCCAGGTTCTTGGTTACTTTCACTGA 378 0.4286 MGRRILNDALRSMVNAERRGKAMVELKPISTLIWLKFLIGYIKDFQVYDPHRVGRITVELQGRINDCKALTHRKDIKARDLEAYRLQTLPTHQWGYVVITTPDGVLDHEEAIKKNVGGQVLGYFH 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04612 125 Gene3D - 65 125 - -
Vimu11g04612 125 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 124 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu11g04612 125 SUPERFAMILY Ribosomal protein S8 3 125 IPR035987 GO:0003735|GO:0005840|GO:0006412
Vimu11g04612 125 Gene3D - 2 64 - -
Vimu11g04612 125 ProSitePatterns Ribosomal protein S8 signature. 95 112 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu11g04612 125 Pfam Ribosomal protein S8 6 123 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04612 Vimu-Chr11 66767707 66768615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04612 1 125 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 74.419 3.70e-70 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04612 K02957 - gmx:100306361 226.098