Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04600 ATGGATGGGGTAATGGATTCTGTTCCCATGGTCTCACGCACTCAACGTGAATTGGGCATCCCTGCAGTGGAGTCACTGTTAAGCGTGGATTTTCGCTTGTGTTGGAGGTGCTTTAACTGGAAGGGTGTTTCTTGTCACTGTTCATTGGTGCAAAGTTGCAATATTTTGGCTGATTCAGCGTTTCAGATGGCTTTTGGTGAATTTGAGATGAGCAGCCAAAAGGGTCGTCATGAAGAAGAGATGGGCACCTCAGAAACCACCGGGAAAGTGGTTGTGGTTGCAGTTAAAGCTTCCAGAGATATTTCAAGGACTGCTCTGGTGTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTGTTGGTGGTCATTCCGGCTCTTTCTTCAAGCAAGAGGGTATGGGGATTTTCAAGATTTACCACCGACTGTGCCTCGAGTAATTGGAGATCCAGTTTAGGAACTGCTTCAGATCAGAAAGAAGTTATAACAAAATCCTGTTCTCAGTTAGTGCTTCAACTCCATGATTTTTATGATCCAGAGAAGATAAAAATCAGAGTGAAGATTCTTTCTGGTTCTTCATGTGGAGGTGTGGCCGCTGAGGCCAAGAGAGTTGAATCAAGCTGGGTTATATTGGACAAAAAGTTGAAGCATGAAAAGAAATACTGCATGGAGCAGCTGCATTGCAATATTGTAATGATGAAGCGGTCTAGGCCAAAGATTCTGCGCTTGAATTTGAACAGTTCACCTAAGATGGAACTGAACATGGGTTGTTCATTGAAACTTGGAAGAAGCTTGAAAGACAACAGTGGACATGGAGGTATAATTAGAGGTCCAGCTGTTACTCCTGCTAGCAGTCCCGAACAAGGGTCACCACCACTGACTGCAACTGACGTTGGAACATCATCAATATCAAGCTCAGATCCTGCTACTTCCCCGTTTTTTCACTCTGACAACTATGAGAGACAAAGGAGAGGTTTCACCTTCGTTCACGAGGGACTGACAAACCTAGAGGATATTGAGTCTGACTCCGAGAGCGAAAAGCTTAGCATGTCGTCCAAGAGTTCATATTTTCAGCCATGGATTGCGAATGTGATTTGCATGGATGGTGATTTCTCAAAGCATGAAGACAACGTGCAAAGATCCAGCGACAAGACTTTGACCACTGCCTATGAAGCTTTGCTTCAGAAATTCTCAAAGTTGGATGAAGATCCTATACTGGGAATGCTTAACTGTAAAATTGATGTGAACTTGAGCAAAAGTGTTAGAGAAGCAATTTCACTAGCCAAAGGTTCACCTCCTGGGCCTCCTCCACTGTGCTCCATTTGTCAGCACAAGGCACCGGTGTTCGGCAATCCACCAAGGTGGTTTACATTTGCTGAATTGCAACTTGCCACCGGTGGTTTTTCACAAGCAAACTTCTTGGCAGAAGGTGGTTTTGGTTCTGTACACCGTGGAGTTCTGCATGACGGACAAGTGATTGCTGTGAAACAGTATAAATTAGCCAGCACTCAAGGAGATAAAGAGTTTTGCTCAGAAGTTGAGGTCTTAAGCTGTGCACAACATCGCAATGTTGTGATGCTAATTGGGTTCTGTGTGGAGAACGGAAGAAGAATGCTGGTTTACGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAGACGAAAGCAGAATGTTCTGGAATGGTCTGCAAGACAAAAAATTGCAGTTGGAGCAGCACGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGCGGCCCAATAATATCCTCCTAACTCATGATTTTGAAGCTTTGGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGAGTCATAGGAACATTTGGGTATTTGGCGCCAGAATACGCTCAGAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCGTTTGGGATAGTACTGCTTGAACTCATCACAGGAAGAAAAGCAGTGGATATAAACCGCCCAAAAGGCCAACAATGTCTCAGTGAATGGGCACGGCCATTGCTTGAAAAACAAGCTATTTATAAACTAGTAGATCCGAGTTTAAGAAACTGCTATGTTGATCAAGAGGTATATCGCATGCTGCAATGTTCCTCTTTATGCATTGGACGGGATCCTCATTTAAGGCCTCGAATGTCACAGGTGCTGAGGATGCTGGAAGGTGACATTCTACTGTGA 2241 0.4444 MDGVMDSVPMVSRTQRELGIPAVESLLSVDFRLCWRCFNWKGVSCHCSLVQSCNILADSAFQMAFGEFEMSSQKGRHEEEMGTSETTGKVVVVAVKASRDISRTALVWALTHVVQPGDCIKLLVVIPALSSSKRVWGFSRFTTDCASSNWRSSLGTASDQKEVITKSCSQLVLQLHDFYDPEKIKIRVKILSGSSCGGVAAEAKRVESSWVILDKKLKHEKKYCMEQLHCNIVMMKRSRPKILRLNLNSSPKMELNMGCSLKLGRSLKDNSGHGGIIRGPAVTPASSPEQGSPPLTATDVGTSSISSSDPATSPFFHSDNYERQRRGFTFVHEGLTNLEDIESDSESEKLSMSSKSSYFQPWIANVICMDGDFSKHEDNVQRSSDKTLTTAYEALLQKFSKLDEDPILGMLNCKIDVNLSKSVREAISLAKGSPPGPPPLCSICQHKAPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLHDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVENGRRMLVYEYICNGSLDSHLYRRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELITGRKAVDINRPKGQQCLSEWARPLLEKQAIYKLVDPSLRNCYVDQEVYRMLQCSSLCIGRDPHLRPRMSQVLRMLEGDILL 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04600 746 ProSiteProfiles Protein kinase domain profile. 470 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04600 746 ProSitePatterns Tyrosine protein kinases specific active-site signature. 591 603 IPR008266 GO:0004672|GO:0006468
Vimu11g04600 746 CDD STKc_IRAK 476 742 - -
Vimu11g04600 746 Gene3D Phosphorylase Kinase; domain 1 442 545 - -
Vimu11g04600 746 MobiDBLite consensus disorder prediction 273 318 - -
Vimu11g04600 746 MobiDBLite consensus disorder prediction 285 318 - -
Vimu11g04600 746 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 546 746 - -
Vimu11g04600 746 Pfam Protein tyrosine and serine/threonine kinase 474 740 IPR001245 GO:0004672|GO:0006468
Vimu11g04600 746 Gene3D Transferase(Phosphotransferase) domain 1 546 744 - -
Vimu11g04600 746 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 442 545 - -
Vimu11g04600 746 FunFam Dual-specific kinase DSK1-like 82 236 - -
Vimu11g04600 746 PANTHER OS01G0750732 PROTEIN 367 744 - -
Vimu11g04600 746 SUPERFAMILY Protein kinase-like (PK-like) 450 741 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04600 Vimu-Chr11 66680685 66684094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04600 450 744 Trihelix Transcription Factor Family AT1G70460 51.163 3.42e-98 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu11g04600 PK_Tyr_Ser-Thr 6.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04600 - - gmx:100305413 1259.97