Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04599 ATGGGAAGGAAGTGCTCACATTGTGGAGTTATAGGGCATAATTCAAGGACCTGCACATCTTTGAGAGGCTCTTCTTTCGTTGGACTTCGTCTCTTTGGCGTGCAGTTAGACACTTGTGTTACCATCAAGAAAAGCTTCAGCATGGACTCCTTACCCTCTTCATCATCTTCCTCATTTTCTTCTTCAAGAATAACCATCGATGAAAACTCTGACCGAACCTCTTTTGGGTATCTATCAGATGGTCTCATAGGTCGAGTTCAACAAGAGAGGAAGAAAGGAGTGCCGTGGACAGAAGAGGAACACAGAATATTCCTTGTCGGACTGGAGAAGCTGGGAAAGGGTGATTGGAGGGGAATCTCCAGAAACTTTGTCACCACAAGAACTCCAACACAAGTGGCAAGCCATGCTCAAAAATACTTTCTTAGATTGGCAACTATAGATAAGAAGAAGCGACGTTCAAGTCTCTTTGACGTGGTCGGTAGCAACAACGTAGGAGGTTGTAATTCAGTTTCGGGTTATCATAAAAAAGATGATTCGAAATGTGAAGTTAAGAATAGTGATGCCACTTTGTCGTTGCTAGGGCGCATAACCTACTTTCAACAAGAAACGAAATCGGATTATAAGATGCAAGAAAAGCTTGATAATTGCCCTCATCAAGTTCCTAATCTGGAGCTTACTCTTCGTTCCTGCTTGGGACAATTAGTGTGA 708 0.428 MGRKCSHCGVIGHNSRTCTSLRGSSFVGLRLFGVQLDTCVTIKKSFSMDSLPSSSSSSFSSSRITIDENSDRTSFGYLSDGLIGRVQQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKKRRSSLFDVVGSNNVGGCNSVSGYHKKDDSKCEVKNSDATLSLLGRITYFQQETKSDYKMQEKLDNCPHQVPNLELTLRSCLGQLV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04599 235 PANTHER TRANSCRIPTION FACTOR KUA1 3 186 - -
Vimu11g04599 235 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Vimu11g04599 235 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 142 IPR006447 GO:0003677
Vimu11g04599 235 CDD SANT 95 140 IPR001005 -
Vimu11g04599 235 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
Vimu11g04599 235 Gene3D - 94 146 - -
Vimu11g04599 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Vimu11g04599 235 ProSiteProfiles SANT domain profile. 96 144 IPR017884 -
Vimu11g04599 235 SMART sant 92 142 IPR001005 -
Vimu11g04599 235 FunFam transcription factor MYB1R1 94 145 - -
Vimu11g04599 235 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04599 Vimu-Chr11 66670637 66671576 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g04599 Myb_DNA-binding 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04599 - - gmx:778093 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04599 11 66670637 66671576 Vimu11g04599 11 66670637 66671576 ECH