Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04585 ATGGAAGACAATGATACGCGGAGGGATAATGGTGGAAATGGAGTGATAGTGCCACCCTGCACTTGCTCGGGCGAAGAATTTCGCGCGCCTGGCGGTGGAAAAGGATCATTGCGAGCTGTTGCGGCTGCTAGAAACGGTTCTTCTGTTTCAAATTATGACATGGCTGTGTCGCGGAACGTCAAGAAAACACAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGCCGATTACATTGTGAACAGAGTGTTGCGGAAGGATGGTCCTTCGCTTGGTCAGGAGTTTGACTTTCTTCCTTCTGGACCCAGACACACTTCTGCTTGTCAAGAGGACCAAGGATCCTCAAAAAAGAGGAAGGGTTCCAAGAGTGCAATTCGAAGTCTCACTGATTGTAATAGGACAGCACCTGTGAAGAAGCATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCTAGAGATCTTCCAATTAATTTTGGCGTTGATGGCCAAGAAGTTCCTTTACTTTCAAAGTCTATAGGACCGAAGCTGATCCATGAAAACAACAGATCACGGAAAACAGTAAACAGGAATGTAATGCCAAAAAATAAAATGCAGAATAAGAGAAATAAATCACAGGATAAGAGGAAAATTTCCATGCAAAGAAGAGTGGGGGAACTATGTGTGACTCAGAATCAGTCTCCAAACAAAAGCTGTGGACTAGCTCTTGATAATGCAATATCAGAGGAGGGAGTTGATCGAGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGAAACTGATCTGTTTAGGTGTTCTAATCATCTTGCTGCTAGTGGAATGCTTGTCTGCTCACTTTGTAAAGGTAACTTGGAGGAACAAAAATTGACTAGTATTCCTTGTTATATTCAAATGAGTAATGATGTCATGGAGCTGGAATATGCGCTAGTGAAGTTTCCACCAGATACTGTCACGATGAAGAAACCTATCCATTTGCAACCTTGGGACTCCTCTCCTGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCCATAATTGTTGATATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTAGCCCTTCTCACACTTCTTCTATCTGACATTGAAGTGGAGCTAACTAATGGATTTTCACCTCATTTAAATAAATCATGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAGGAATATTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCGAAACAAGGGTCCTTACGTAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAATATTTTGTCAGAGAGAGGAAACACTGGATGCAAAGTGATTGTTGAATTAAACCTTGCCAGCTCTACAGAGGAACTTGAGTCTTTAATATGTTCTACTCTGTCAAGTGATATTACTTTATTTGAAAAGATTTCAACGACTGCTTACCGATTGCGAATGAGCACAGTTATGAAGGACAGTGATGAATCTCATTCAGATACAGAGTACTCTGGTAGTGTTGATGATGAACTTAATGACACTGACACATGCAGCAGTGCTGATGATTTTGAAAATGATTCAATAAATTCCAGTATAAGAAAATTGAAGAGTGTAAACAATCATAAAAATAATATGCGGAAAATATACACTGAAATTGATGAGAGCCGTTCCGGAGAAGCATGGTTATTAGGACTGATGGAGAGTGAATATTCAAACTTAAACATTGAAGAAAAATTGAATGCATTGGCAGCGTTAACTGATCTTGTTTCATCTGGATCCAGCGTTAGGATGAAGGATTTGTCTAAAGTCTCAGCTGATTGCAATTCTAGCATCCAATTACGAGGGTCTGGAGCTAAAATAAAGAGATCAGTAGTAAAGAAACCTGGGTCCCTTTTGAACCATAAAGTACACTTGAATTCTGATCCCTATAGTGTAGACTCCTCATCATTATTCTCAAGATTCCACAATTATGAAGCTTACTTCCAAAAGGGAAACGGTTCATCTATGTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGGCCATGTAATGTAGATGATCCTGGTCACAGGAGGATATATTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACCGTGGAGGCGTTATGTGCGTTGATGTCAGTTCTGGACGATAGAGGAAAACGGGAGGCTCTTCTTATTGAATCATTGGAAAGGAGACAAACATCACTATGCAGATCTATGGCCAGGATTAATGTTAATAGTACTGGAATGGGTTCTTTGTCACATTCTGATCAGTCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAACCTGAACATGACCGAGACAGCTAAAGATTCCTTTGCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGTAGAGGATCTAATTAAGAAATGGATCCGGGTTCAAGAATACGATTCTTGGATTTGGAATTCTTTTTACTCAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTACATGGACTCTCTTGCCAAATGTAAGAGTTGTCATGATCTTTACTGGCGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGACCTTGAAGAAAAATATGCTATCCACATAGCCACATGCAGGGAGAAAGAAGACAACAACACATTTCCTAATCACAAAGTGCTGCCATCACATATTCAATCTCTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAGGATGCCCTGGTTGGTGCTTGGAGGAAATCTGCTCATAAACTATGGGTGAAACGACTCAGACGCACCTCAACTTTAGTGGAACTTTTACAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCAAATTTCCGGATGATGTGTTTGAAGAAATCATTGCATCGTTTGCATCTATGCCCCGTACGTCATCCGCCCTTGGTCTGTGGTTAGTGAAGCTAGATGTCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCTGAAAAAGCAGGGAACCGGTAAGATTTAA 3267 0.4047 MEDNDTRRDNGGNGVIVPPCTCSGEEFRAPGGGKGSLRAVAAARNGSSVSNYDMAVSRNVKKTQKRKGLQELFTADYIVNRVLRKDGPSLGQEFDFLPSGPRHTSACQEDQGSSKKRKGSKSAIRSLTDCNRTAPVKKHGIGKGLMTVWRATNPDARDLPINFGVDGQEVPLLSKSIGPKLIHENNRSRKTVNRNVMPKNKMQNKRNKSQDKRKISMQRRVGELCVTQNQSPNKSCGLALDNAISEEGVDRVSMLIDDEELELRELQEETDLFRCSNHLAASGMLVCSLCKGNLEEQKLTSIPCYIQMSNDVMELEYALVKFPPDTVTMKKPIHLQPWDSSPEIVKKLFKVFHFIYTYAIIVDICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNTGCKVIVELNLASSTEELESLICSTLSSDITLFEKISTTAYRLRMSTVMKDSDESHSDTEYSGSVDDELNDTDTCSSADDFENDSINSSIRKLKSVNNHKNNMRKIYTEIDESRSGEAWLLGLMESEYSNLNIEEKLNALAALTDLVSSGSSVRMKDLSKVSADCNSSIQLRGSGAKIKRSVVKKPGSLLNHKVHLNSDPYSVDSSSLFSRFHNYEAYFQKGNGSSMSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTVEALCALMSVLDDRGKREALLIESLERRQTSLCRSMARINVNSTGMGSLSHSDQSELDMVTDDSYSPASDVDNLNMTETAKDSFASAGAVVIEAGKKVEDLIKKWIRVQEYDSWIWNSFYSDLNVVKYGRRSYMDSLAKCKSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHIATCREKEDNNTFPNHKVLPSHIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLDDFVGAINKDWLFQCKFPDDVFEEIIASFASMPRTSSALGLWLVKLDVIIAPYLDRVHPLKKQGTGKI 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04585 1088 PANTHER HOMEOBOX PROTEIN SIX 211 1069 - -
Vimu11g04585 1088 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 730 803 IPR028941 -
Vimu11g04585 1088 Coils Coil 249 276 - -
Vimu11g04585 1088 ProSiteProfiles DDT domain profile. 342 401 IPR018501 -
Vimu11g04585 1088 SMART testlast3 342 401 IPR018501 -
Vimu11g04585 1088 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 613 652 IPR028942 -
Vimu11g04585 1088 MobiDBLite consensus disorder prediction 96 127 - -
Vimu11g04585 1088 Pfam DDT domain 345 398 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04585 Vimu-Chr11 66545659 66554160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04585 181 1070 Homeobox Transcription Factor Family AT1G28420 25.256 2.45e-66 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu11g04585 WSD 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04585 - - gmx:100792062 1747.64