Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04581 ATGTCAAGGTTGGTTCAGGAGAAGAAGATAGGTGCAGGACGTGTGGTAGCAGTGGCAATTGAAAATAACAAAACAAGCCAATATGCAGCAAAATGGGCTGTTGATAATCTTCTTCCCAAAGAACAAGCGCTCTTACTGCTCCATGTTAGACAGAGAGCATCTTCCATTCCTACACCAGCGGGAAATCTTGTACCTCTTGATGGTAACGATGATGTGGCTAGAGCATACATGCAACAGATGGACAACGAATCTAAAGAACTTTTCGCTTCGTTTCGGATACAATGCAAAGAGGTCTTACTGGATGACGTAGATATAGGCAAGGGATTAATAGAAGGTATTTCTAAATACGCCATCGAGCTTCTGGTACTTGGGGCACCTTCAAGGAGTGGTCTTGTAAGGAGATTTAGGACATCGGATGTTCCAAGTCTTGTGTCCAAAGGGGCACCACCATTCTGTACTGTGTACATAATTTCCAAAGGAAAAATCGCATCGGTGAAAACTGCTACTGCTAAACCTCCACCTCGTAACAATACACTGCAACCGCAGCAATCTCTTCAAACTCCTGGGAGAATGGATCCACACCTAACACGCAATCCTGCCCTAGCACGACCATCAATGGAGAAGGTACCCTACATTGTCCGCCAGCAACCAGCAGATGAAGACGACATAATATCACCCTTCACAAGACCTGGTAGAGGAGGAAGTTACAGATCGTACGAGTCCTCCATCGCTGACTCTGATATTTCATTTGTGAGCAGTGGAAGGCCTAGTGTTGATAGGATGTTCCCTTCAATGTATGATGAAATGGACTCTTCTATAAATCCCCGGCTTTCAACAGGCTCAGATTTTGATATGAGAAGCTATGGCTCTTCATTCTCAGGAGCCAAATCAATTGATCATGGTGACTTCTCATTCAGTTCACAAGACAGTGGGACATCAATGTCATCGTCCATATTTTCAGCCTCAGATGAAGTGGAAGCTGAAATGAGGAGACTGAAGCTAGAACTGAAGCAGATGGAAATGTACAGTACTGCATGCAAAGAAGCTATGACAGCTAAGCAAAAAGCACTAGAACTTCAGCGTTGGAAAGTGGAAGAACAAAGGAAAATGGAAGAGGCACGATTAACTGAAGAAACAGCATTGTCAATGGATGAGAAGGAGAAAGCAAAATGTGTAGGTGCCATGGAAGCAGCTGAAACATCTCGAAAAATTGCAGAGTTGGAAGCACGAAAGAGAATGACTGTAGAATCTGGGCATAAGAAGAAGACTACAGATATGTTTTCACACTGTCCCGCCAGGTACAGAAAGTACACTATAGAGGAAATAGAAGAAGCAACGAATTTATTTTCGAACTCTCTCAAGGTCGGTGAAGGTGGTTATGGGCCAGTCTACAGATGTGAACTAGATCACACACCAGTTGCAGTGAAGATATTGAAACCAGATGCAGCTCAGGGACAAGCACAGTTTCAGCAGGAGATTGAAGTGCTAAGTAGCATAAGGCATCCAAATATGGTTCTTCTCCTTGGAGCGTGCCCAGAGTTTGGCTGCTTGGTGTATGAGTATATGGCTAATGGAAGTTTGGATGATTGCCTATTTCGGAGGGGCAACAAAAGAGCTCTTCCCTGGCAGCTGAGATTCCGAATTGCTGCAGAGATTGCAACTGGGCTCCTTTTCCTACACCAGACAAAGCCAGAACCACTTGTGCACCGTGACTTGAAACCTGGGAATATTTTGCTTGACCGTAACTTCGTGAGCAAGATCAGTGATGTGGGATTGGCCAGGCTTGTTCCGGCTTCAGTTGAAGACAGTGTCACACAGTATCGAATGACATCAACTGCGGGAACTTTCTGTTACATTGACCCTGAGTATCAGCAAACGGGCATGCTGGGAACCAAATCTGACATTTATTCATTGGGGATCATGCTTCTACAGATAATAACAGCAAAGCCACCAATGGGTTTGACTCACCATGTTGAAAGAGCTATTGAGAAAGGGACTTTTGCTGAGATGCTTGACCCAGCCGTTGAGGACTGGCCAATTGAACATGCCTTGCGTTTTGCCCAGCTTGCCTTGGCGTGTGCAGAAATGAAAAGAAAAGATAGACCTGATCTTGCAAAGGTTGTATTGCCCGAGCTCAATAAACTCAGAGACTTTGCTGAAGATAACATGCCCATGATGATGATGTTCGGTGCTCCCACAAGGAGCAACTACAACTACTCAAACTACCCCATTTCCTCAGCTCAAGAATGTCCGGATATGAAACCCAGTCAAGCTCACATGATTAATATGCAATATGCACTTCAACGCCTACCTTAG 2316 0.4469 MSRLVQEKKIGAGRVVAVAIENNKTSQYAAKWAVDNLLPKEQALLLLHVRQRASSIPTPAGNLVPLDGNDDVARAYMQQMDNESKELFASFRIQCKEVLLDDVDIGKGLIEGISKYAIELLVLGAPSRSGLVRRFRTSDVPSLVSKGAPPFCTVYIISKGKIASVKTATAKPPPRNNTLQPQQSLQTPGRMDPHLTRNPALARPSMEKVPYIVRQQPADEDDIISPFTRPGRGGSYRSYESSIADSDISFVSSGRPSVDRMFPSMYDEMDSSINPRLSTGSDFDMRSYGSSFSGAKSIDHGDFSFSSQDSGTSMSSSIFSASDEVEAEMRRLKLELKQMEMYSTACKEAMTAKQKALELQRWKVEEQRKMEEARLTEETALSMDEKEKAKCVGAMEAAETSRKIAELEARKRMTVESGHKKKTTDMFSHCPARYRKYTIEEIEEATNLFSNSLKVGEGGYGPVYRCELDHTPVAVKILKPDAAQGQAQFQQEIEVLSSIRHPNMVLLLGACPEFGCLVYEYMANGSLDDCLFRRGNKRALPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPASVEDSVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDIYSLGIMLLQIITAKPPMGLTHHVERAIEKGTFAEMLDPAVEDWPIEHALRFAQLALACAEMKRKDRPDLAKVVLPELNKLRDFAEDNMPMMMMFGAPTRSNYNYSNYPISSAQECPDMKPSQAHMINMQYALQRLP 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04581 771 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 421 521 - -
Vimu11g04581 771 SUPERFAMILY Protein kinase-like (PK-like) 428 708 IPR011009 -
Vimu11g04581 771 Pfam Protein kinase domain 452 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04581 771 FunFam U-box domain-containing protein 51 522 722 - -
Vimu11g04581 771 CDD STK_N 15 160 - -
Vimu11g04581 771 Gene3D Phosphorylase Kinase; domain 1 428 521 - -
Vimu11g04581 771 ProSiteProfiles Protein kinase domain profile. 449 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04581 771 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 144 - -
Vimu11g04581 771 PANTHER OS02G0152300 PROTEIN 15 739 - -
Vimu11g04581 771 SMART serkin_6 449 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04581 771 Coils Coil 322 342 - -
Vimu11g04581 771 Gene3D HUPs 14 157 IPR014729 -
Vimu11g04581 771 MobiDBLite consensus disorder prediction 170 191 - -
Vimu11g04581 771 Gene3D Transferase(Phosphotransferase) domain 1 522 727 - -
Vimu11g04581 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Vimu11g04581 771 MobiDBLite consensus disorder prediction 167 201 - -
Vimu11g04581 771 Pfam Universal stress protein family 14 138 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04581 Vimu-Chr11 66512499 66516409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04581 16 736 Receptor kinase-like Gene Family AT5G35380 55.978 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu11g04581 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04581 - - gmx:100803837 1251.5