Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04578 ATGGTTTTCTTTACTTTGCAGACCGAAGTTAACTATTTAGGTCAATTCAGTCACCCTAATCTAGTGAAGCTCATTGGATATTGCTGTGAGGACGACCACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCCGCAAGGGGGCTGGCTTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGTTAGACGAGGATTTCAATGCTAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGGTATGCTGCTCCCGAGTATGTCATGACTGGTCATTTGACAGCTCGAAGTGATGTATATGGTTTTGGGGTGGTACTACTTGAAATGCTTATTGGTAGAAGGGCATTGGACAAGAGCAGGCCTAGCCGAGAACACAACTTGGTCGAGTGGGCCCGCCCGCTGCTGAATCATAATAAGAAACTTCTGAAAATTTTAGACCCAAAATTAGAGGGACAATATTCAAGTAAAACTGCATTAAAGGTAGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCTCTAATGAGCCAGGTTGTTGAAATTCTCGATAACTTTCAGTCAAGGGAGGAAAATGAGGAAGATCAAATGCTTCAAACTGGTGGTAGCAGTAGTATAACCCTTTATGAGGTTCCCAAGGGCAGCAGCAATGACACTCCAACTTAA 822 0.4319 MVFFTLQTEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDEDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILDNFQSREENEEDQMLQTGGSSSITLYEVPKGSSNDTPT 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04578 273 MobiDBLite consensus disorder prediction 242 273 - -
Vimu11g04578 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672|GO:0006468
Vimu11g04578 273 FunFam Probable serine/threonine-protein kinase PBL8 41 253 - -
Vimu11g04578 273 MobiDBLite consensus disorder prediction 249 273 - -
Vimu11g04578 273 Gene3D Transferase(Phosphotransferase) domain 1 42 258 - -
Vimu11g04578 273 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04578 273 PANTHER OS01G0588500 PROTEIN-RELATED 7 239 - -
Vimu11g04578 273 Gene3D Phosphorylase Kinase; domain 1 4 41 - -
Vimu11g04578 273 PIRSF ILK 3 251 - -
Vimu11g04578 273 Pfam Protein kinase domain 6 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04578 273 SUPERFAMILY Protein kinase-like (PK-like) 6 238 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04578 Vimu-Chr11 66486729 66489901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04578 8 271 Glycoside Hydrolase AT3G07070 49.813 1.02e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g04578 Pkinase 7.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04578 - - gmx:100800465 507.294