Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04572 ATGTTGGAAGGCGGTGCGAAATTCCCGGGAATAATAGATCTCAACAAAAATAATAACAACTACTATGATTTCTCCCAGGGCTTCTACCATAAGCTTGGGGAGGGTACCAATATGTCAATTGACAGTGTTGGGAGCTTACAGACAAGTAATGGTGGAGGATCTGTTGCGATGTCAATTGATAATAGCAGTGTTGGGTCCAATGATTCCCATACTCGCATGTTGGACCACCAAGGGTTGCGGAGGCGTGCCAATGACAACTACTCTGTTGCACATAGTGCCAATCGTCGGGGAAGAGTTACCCATGCTTTGAGCGATGATGCTTTAGCTCAAGCTCTAATGGACAACAGTTCTCCTACTGAAGGGCTTGATAATTTTGATGAGTGGACAATTGATTTGAGGAAACTCAATATGGGTGAGCCTTTTGCACAAGGAGCCTTTGGGAAACTCTACAGAGGTACTTACAATGGTGAAGATGTTGCTATTAAAATATTGGAGAGGCCGGAAAATGATCCAGCAAAGGCTCAATTGATGGAACAGCAATTCCAGCAGGAGGTCATGATGTTGGCTACCCTAAAGCATCCTAACATAGTTCGATTCATTGGCGCATGCCGTAAGCCAATGGTGTGGTGCATTGTGACCGAGTATGCTAAGGGTGGTTCAGTTCGACAATTTTTAATGAAGCGGCAAAAGCGATCAGTTCCTCTCAAATTGGCTGTCAAGCAAGCTTTGGATGTTGCAAAGGGGATGGCTTATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAGTCAATTAAAATTGCTGACTTTGGAGTTGCCAGAATTGAGGTTCAAACTGAAGGAATGACACCCGAGACTGGAACATACCGTTGGATGGCTCCACAAATCCAGTATTCATGTGCTTGTCCTATTAGTAAAGTGTTTCCAGTTACTACCCCTGTCAACAAGAAGTTAAATGAATCAAAGTGGCCACTGCTTGGTTTTCAGTTAGTGATCTTGTCGTGGTTTAGGGTAAACTGCTATGCCAGGGTTTCTTGTCTTGCTATATTGTTGCCTGCGTGGTTGAAGCTTAGCAGTTTAACAATGTTGTGGTCATGCCTTGATGGGTCACAGTCATTGCATGATGAGGAGATGATCCAGCACAGGCCATACACACAAAAGGTGGATGTATATAGCTTCGGAATTGTTCTATGGGAACTCATCACCGGTATGCTTCCATTTCAGAACATGACAGCAGTGCAGGCAGCATTTGCAGTTGTCAACAAAAATGTTCGTCCGATCATACCCAATGATTGCCTACCTGTTCTCCGGGACATCATGACAAGATGCTGGGATCCCAACCCTGATGTGAGGCCACCATTTGCTGAAGTTGTTGGAATGCTCGAGAATGCAGAGACTGAGATCTTGACAACAGTTCGGAAGGCCCGGTTCAGGTGTTGCATCACTCAACCAATGACTGCTGACTGA 1497 0.4469 MLEGGAKFPGIIDLNKNNNNYYDFSQGFYHKLGEGTNMSIDSVGSLQTSNGGGSVAMSIDNSSVGSNDSHTRMLDHQGLRRRANDNYSVAHSANRRGRVTHALSDDALAQALMDNSSPTEGLDNFDEWTIDLRKLNMGEPFAQGAFGKLYRGTYNGEDVAIKILERPENDPAKAQLMEQQFQQEVMMLATLKHPNIVRFIGACRKPMVWCIVTEYAKGGSVRQFLMKRQKRSVPLKLAVKQALDVAKGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPQIQYSCACPISKVFPVTTPVNKKLNESKWPLLGFQLVILSWFRVNCYARVSCLAILLPAWLKLSSLTMLWSCLDGSQSLHDEEMIQHRPYTQKVDVYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKNVRPIIPNDCLPVLRDIMTRCWDPNPDVRPPFAEVVGMLENAETEILTTVRKARFRCCITQPMTAD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04572 498 SMART serkin_6 135 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04572 498 Gene3D Transferase(Phosphotransferase) domain 1 218 488 - -
Vimu11g04572 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Vimu11g04572 498 PANTHER SERINE-THREONINE PROTEIN KINASE 55 473 - -
Vimu11g04572 498 Gene3D Phosphorylase Kinase; domain 1 124 217 - -
Vimu11g04572 498 FunFam Serine/threonine-protein kinase isoform 1 125 217 - -
Vimu11g04572 498 CDD STKc_MAP3K-like 142 471 - -
Vimu11g04572 498 Pfam Protein tyrosine and serine/threonine kinase 136 305 IPR001245 GO:0004672|GO:0006468
Vimu11g04572 498 Pfam Protein tyrosine and serine/threonine kinase 387 470 IPR001245 GO:0004672|GO:0006468
Vimu11g04572 498 SUPERFAMILY Protein kinase-like (PK-like) 122 479 IPR011009 -
Vimu11g04572 498 ProSiteProfiles Protein kinase domain profile. 135 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04572 Vimu-Chr11 66410639 66414799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04572 15 305 MAP Kinase Kinase Kinase AT4G31170 74.744 2.80e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu11g04572 PK_Tyr_Ser-Thr 3.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04572 - - gmx:100788536 609.372