Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04567 ATGCCTGAAAACTCACACATCTGCACATGGCTAATTCATCTCTCACTAACACTTATCACTGTAACAGCAACATCATCATCACACTGTTCCATGGCCGTCACGCCCTCCACCTCTCTCCTCTCCTTCCTCCAACGCCTCCAAAAAACCGCCTTCGAAGCCTTCGGCGGTACCGATTTCGATCCCAAGACCTACGTCGACGTGCCTCTCAAGTTCCCACTATCCGTCACCCAGGACGCGTTCCAGAAGCTTCCGCGTAACGCCAACGGCACCGTGGCGGCTGAAGATTTAAAACGCTTTCTAGAAGCCTACTTCGGAGCTGCAGGGGACGATCTGGTGCACCTGACCCCACACGATTTCGTTCGCGAACCGGAGGGTTTCTTGCCCAAGGTCAAACACCCTCGGGTGCGGGCCTGGGCCTTGCAGGTCCATTGGCTTTGGAAAAACTTGACCCGGAAAGTATCCGATGCGGTGCAGGCGCACCCGGACTTGCATACGCTGCTTCCTCTCCCCGGTTCCGTTGTCATTCCCGGTTCGCGTTTTCGCGAGGTCTATTACTGGGATTCTTACTGGGTTATTAGGGGTCTGATCGCGAGTAAAATGCATGACACTGCTACTGCTATTGTGACCAACCTCATTTCCTTGATAGAACAATATGGATTTGTTCTTAATGGTGCTAGAGCATACTACACTAACAGGAGCCAGCCTCCCCTTTTAAGCGCTATGATTTATGAGATATACCGTACCACCGGTGACGTGGAATTGGTTAAAAGATCTCTACCTGCACTACTCAAAGAGTATGAATTTTGGAATTCAGATATACATAAGGTGACCATTTTGGATGCTCAAGGTTGCACTCATACCTTAAATCGCTATAATGCAATGTGGGACAAACCCAGGCCAGAATCATCCATTAAGGACCAGGAATTTGCTTCCAACTTCTCTAGTGTTTCAGAAAAACAGCAGTTTTACCGTGACCTGGCTTCAGCTGCTGAATCAGGATGGGATTTCAGCACTAGATGGATGAGAAATCCGCCTAATTTCACAACATTGGCTACAACTTCCGTAATACCTGTTGATTTAAATGCATTTGTACTCGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTGTTGGAGATAATGGCACTGCTGAACGGTTCCTGGAAAATGCTGATCTTAGAAAGAAGGCAATGGACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGACTACTGGCTCGAAAATACATGTGAGGAGGTTCATGTTTGGAAAAACGGGCGCCAGAATAAAAATGTATTTGCTTCCAATTTTGTTCCTTTGTGGATGAGACCATTTTATTCAGACACTTCACTTGTGGCTAGTGTCGTTGAAAGTCTCAAAACTTCCGACCTTGTCCGTGCCGCTGGAGTTGCAACTTCTTTGACTGATTCAGGACAACAGTGGGACTTTCCAAATGGCTGGGCGCCGCTTCAACACATGCTAGTGGAAGGCCTTCTAAAATCTGGGTCGCAAGAAGCAAGGTCATTGGCTGAAGAAATTGCCATCAGATGGACTGGTTTTGGCTGGTCAAATGGTGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTGAAGATCGGAACATAGAATGCTGA 1641 0.4729 MPENSHICTWLIHLSLTLITVTATSSSHCSMAVTPSTSLLSFLQRLQKTAFEAFGGTDFDPKTYVDVPLKFPLSVTQDAFQKLPRNANGTVAAEDLKRFLEAYFGAAGDDLVHLTPHDFVREPEGFLPKVKHPRVRAWALQVHWLWKNLTRKVSDAVQAHPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLIASKMHDTATAIVTNLISLIEQYGFVLNGARAYYTNRSQPPLLSAMIYEIYRTTGDVELVKRSLPALLKEYEFWNSDIHKVTILDAQGCTHTLNRYNAMWDKPRPESSIKDQEFASNFSSVSEKQQFYRDLASAAESGWDFSTRWMRNPPNFTTLATTSVIPVDLNAFVLGMELNIAFFAKVVGDNGTAERFLENADLRKKAMDSVFWNANMKQWLDYWLENTCEEVHVWKNGRQNKNVFASNFVPLWMRPFYSDTSLVASVVESLKTSDLVRAAGVATSLTDSGQQWDFPNGWAPLQHMLVEGLLKSGSQEARSLAEEIAIRWTGFGWSNGVVLAFLEEFGWPEDRNIEC 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04567 546 ProSitePatterns Trehalase signature 2. 482 491 IPR018232 GO:0004555|GO:0005991
Vimu11g04567 546 Gene3D - 52 544 IPR012341 GO:0005975
Vimu11g04567 546 SUPERFAMILY Six-hairpin glycosidases 59 539 IPR008928 GO:0005975
Vimu11g04567 546 PANTHER TREHALASE 24 520 IPR001661 GO:0004555|GO:0005991
Vimu11g04567 546 PRINTS Glycosyl hydrolase family 37 signature 218 236 IPR001661 GO:0004555|GO:0005991
Vimu11g04567 546 PRINTS Glycosyl hydrolase family 37 signature 323 340 IPR001661 GO:0004555|GO:0005991
Vimu11g04567 546 PRINTS Glycosyl hydrolase family 37 signature 398 414 IPR001661 GO:0004555|GO:0005991
Vimu11g04567 546 PRINTS Glycosyl hydrolase family 37 signature 475 491 IPR001661 GO:0004555|GO:0005991
Vimu11g04567 546 PRINTS Glycosyl hydrolase family 37 signature 288 305 IPR001661 GO:0004555|GO:0005991
Vimu11g04567 546 PRINTS Glycosyl hydrolase family 37 signature 355 372 IPR001661 GO:0004555|GO:0005991
Vimu11g04567 546 Pfam Trehalase 59 519 IPR001661 GO:0004555|GO:0005991
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04567 30 546 Trehalose Biosynthesis Gene Families AT4G24040 55.216 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04567 K01194 - gmx:547539 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04567 11 66368119 66372744 Vimu11g04567 11 66368119 66372744 ECH