Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04549 ATGCAACATCTCAGCTTTATCAATGACTCTAAAAGAACAATCTTAAACATTTTGGTATATATCTTCCTTACCCTATTCACCAATTCTAACATATCACAACCAGTGCATGCTGAACTGAAGCTTATTCAACAAACTTTCTATAAATGTGTTCCACACTTTTGTATCTGTGTTGAATATGTGATGGATGTGCCACAAACTCCAACCCCCTCTCCACATTTGTATCCACAAGAACTTCAACTTAAACTTTACCAAGCCTTCATCTTCTCCATTCCCATACTCTTTTCCATCATTCTAGTTCTCTTGTTTTACTTGTTCTACCTCAAAAGAAGAGCTTCCTCTCTCTCATCACCACCTCTCCATATGCTTACCAACACTGCCAATCCTCAAACAACATATCCTTACCCTTCACAACCTTACCGATTAGATCTGACAGTGCAATTTCTTGACAAACTTCCAAGAATTTTATTTGATGAGGATTTTGGAACAAGAGATTCAGTATGTTGTGTTTGCCTTGGAGAATTTGAGCTGAAGGAAGAGCTGCTACAAATTCCTTATTGCAAGCATGTGTTTCACATAAGCTGCATATGCAACTGGTTGCAATCAAACTCCACGTGTCCACTTTGTAGATGTTGCATCACACCCTCCACTAAGTTTCTTAATACACCCTCACCTATTGTATCAGACTCACCACAGCAGGGTGGAATTTCAGGCTCTTCATCACACACCATGTCTATGCCTCAGCAACAAGAAGATCAAGTTGGTAATTCCACAAACACTACCATTTTCCAAGGAAATGGTGTATTACTTAGATGA 813 0.3899 MQHLSFINDSKRTILNILVYIFLTLFTNSNISQPVHAELKLIQQTFYKCVPHFCICVEYVMDVPQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHMLTNTANPQTTYPYPSQPYRLDLTVQFLDKLPRILFDEDFGTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCITPSTKFLNTPSPIVSDSPQQGGISGSSSHTMSMPQQQEDQVGNSTNTTIFQGNGVLLR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04549 270 PANTHER RING-H2 FINGER PROTEIN ATL16 68 253 IPR044600 GO:0016567|GO:0016740
Vimu11g04549 270 MobiDBLite consensus disorder prediction 222 270 - -
Vimu11g04549 270 CDD RING-H2_EL5-like 167 209 - -
Vimu11g04549 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 215 IPR013083 -
Vimu11g04549 270 SMART ring_2 167 208 IPR001841 -
Vimu11g04549 270 SUPERFAMILY RING/U-box 145 220 - -
Vimu11g04549 270 Pfam Ring finger domain 167 209 IPR001841 -
Vimu11g04549 270 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 136 214 - -
Vimu11g04549 270 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04549 Vimu-Chr11 66269060 66271173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04549 63 255 C3H Transcription Factor Family AT4G10150 34.328 1.11e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04549 K19039 - gmx:100806554 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04549 11 66269060 66271173 Vimu11g04549 11 66269060 66271173 ECH