Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04542 ATGGACAATACTCACTCAAAACAGCGAATCGAGGAAACAGTTCGCAGGATTTTGCAAGAGTCGAACATGGACGAGGTTACGGAGTCTAAGATTCGAAAGCAGGCCTCCGAGGAGCTCGGTCTCAACCCGTCTCAGCCCCAATTCAGAGCATTCGTGAAACAGGTCGTGGGGGCTTTTCTGCAAGAAAAGCAGCAAGAAATAGAAGAACAGCAGCAACAACAGGAAGAAAATGATGAGGGAGAAGTTGAAGAAGGACAAGGAGAATCCAAGGGCAAGGAGTACGATAATGAAGGCAATCTCATCATCTGCAAGCTTTCAGAGAAGAGAAGGGTGAGCATTCAGGATTTCAGAGGGAAAACGTTGATCTCCATTCGCGAGTACTATAATAAAGGTGGCCAGGAACTTCCTTCTAACAAAGGAATAAGTTTGACTGAAGAGCAGTGGTCTATCTTTAAAAACAATGTGCCTGCCATAGAAAAAGCCATTAAGAAAATGGAATCTCGTTGA 507 0.4458 MDNTHSKQRIEETVRRILQESNMDEVTESKIRKQASEELGLNPSQPQFRAFVKQVVGAFLQEKQQEIEEQQQQQEENDEGEVEEGQGESKGKEYDNEGNLIICKLSEKRRVSIQDFRGKTLISIREYYNKGGQELPSNKGISLTEEQWSIFKNNVPAIEKAIKKMESR 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04542 168 MobiDBLite consensus disorder prediction 63 94 - -
Vimu11g04542 168 FunFam RNA polymerase II transcriptional coactivator KELP 92 168 - -
Vimu11g04542 168 Pfam Transcriptional Coactivator p15 (PC4) 103 153 IPR003173 GO:0003677|GO:0006355
Vimu11g04542 168 Coils Coil 57 83 - -
Vimu11g04542 168 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 4 61 IPR014876 -
Vimu11g04542 168 SUPERFAMILY ssDNA-binding transcriptional regulator domain 102 164 IPR009044 GO:0003677|GO:0006355
Vimu11g04542 168 Pfam DEK C terminal domain 6 60 IPR014876 -
Vimu11g04542 168 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 6 167 IPR045125 GO:0003713|GO:0060261
Vimu11g04542 168 SUPERFAMILY DEK C-terminal domain 3 56 - -
Vimu11g04542 168 MobiDBLite consensus disorder prediction 1 30 - -
Vimu11g04542 168 PIRSF RNA_polymII_KELP 1 168 IPR017415 -
Vimu11g04542 168 Gene3D Transcriptional Coactivator Pc4; Chain A 91 168 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04542 Vimu-Chr11 66242465 66244588 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vimu11g04542 DEK_C 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04542 K25815 - gmx:100499671 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04542 11 66242465 66244588 Vimu11g04542 11 66242465 66244588 ECH