Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04536 ATGGAGGCGGATTTCGTGACCAATGATATGCTCGCACTCACACACGATGCTTTTGATGCCAACGATAATGATGACGTAGCTATTGAAGGGGAAAGATGTGGAATATGTATGGATGTTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTTTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACTGTTGGAAACAGCAAAGTTGAGGATGATTCACTCCTTAGAGATGATGATGATTGGTCCATTGAAGGGAAGAATAACACACTGCAATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGTAATGGGTCGGCTACTGTTGAAGGAGATTCTGATCTCGATACATCAATAGCATGTGATTCATGTGACATATGGTAA 483 0.4161 MEADFVTNDMLALTHDAFDANDNDDVAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTVGNSKVEDDSLLRDDDDWSIEGKNNTLQFPSYYIDENAVICLDGDDCKVRNGSATVEGDSDLDTSIACDSCDIW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04536 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 97 IPR013083 -
Vimu11g04536 160 SUPERFAMILY RING/U-box 24 78 - -
Vimu11g04536 160 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Vimu11g04536 160 Pfam Ring finger domain 32 72 IPR001841 -
Vimu11g04536 160 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Vimu11g04536 160 PANTHER F18C1.6 PROTEIN 27 159 - -
Vimu11g04536 160 SMART ring_2 33 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04536 Vimu-Chr11 66206179 66210176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04536 33 126 C3H Transcription Factor Family AT3G58030 31.683 1.28e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04536 - - gmx:100783955 302.753