Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04525 ATGGCTACCTCACCCATGCTATGTGCTTTCTGTCTCCTCCTTTTCCATCTCCAAACCTCAAGAGGGAATACCAACCAACATCCTAACTGTAACACCCTCAGATGCGGCCATGTAGACATTCTCTTTCCTTTCGGTCTCAAACAATCCAACCAAGATCCTCGCTGCAGCTATTTCCCACTTCCAAGCTTCCAACTTTCTTGCATCAATCGCACACAACCAGTTATAGACGTCCCAGGTTTCGGGAACCTCGTCGTGAAAAACATCGACTACGCCTCCCAAAGCATCCAAGTCAACGACCCCAATGGCTGCCTTCCAAAACGCTTCTTACACGGCTGGAACCTTTCCGGTTCACCTTTTATTTTGAACCCCAGGATTTATGGATCGTCTCCCTTTAACCTCACTTTCATGCGTTGCCCCTCAAACGTCCAGGACTCGTCTCAGTTCCCGTTAATGCCGATTTCGTGCCTAAGCGACAACCGAAACTATTCGGTGATTGCTTCGTGGTCGCAACCTATTGTGTCGTCAACGGTGATGCCGGAACGGTGCCAAGTAATGTCTCACGCTCTTGTTCCTCTCCCTGTGTTGGACATGCCCATGTGGCCCTTCTGGTCCGATCTCAACACAGACCTCGAATTGGTCTGGACCGAACCCAGGTGCAGCGATTGTGCACTCAGTGGTCAAGTTTGTGGGTTCTCTGATAAAAAAAATCAAAGTCTTCGAGTTGGGTGCTTCCCTAGGGACTCCGGCAAAGGTCTTTCGAGGAGTGCAAAGTATGGGTTAGCCATTGGAGTGGGAATACCAGGTCTTTTATGCTTCATCGGAGTGTCTTGTTTTGTCTGCGGTAAGTTTAGGACGCTGAGCCACCGTCGACGTGGCACACATCTTCCGATCACCATTTCCCTGCAACCCGTTCCTTTTGCGGCGGGTCTTGACGGTGCGACGATTGAAAAGTATCCGAAAACTCTTATCGGAGAGAGTGGTCGGTTATTGAAGCCGAGTGACAACACCTGCGCCATTTGCCTCTCGGAATATGAACCCAAAGAGACGCTAAGGAGCATTCCCGAATGTGACCACTATTTTCACGCAGATTGCATCGACGAGTGGCTCAAGTTGAACGGCACCTGCCCCCTCTGCCGGAACTCACCGGAAACATCAACGGCTTCCTTTTCTTCTTCCTCTCCCACTTCCTCCTCATTCTCCTCTCCACAGTAG 1212 0.505 MATSPMLCAFCLLLFHLQTSRGNTNQHPNCNTLRCGHVDILFPFGLKQSNQDPRCSYFPLPSFQLSCINRTQPVIDVPGFGNLVVKNIDYASQSIQVNDPNGCLPKRFLHGWNLSGSPFILNPRIYGSSPFNLTFMRCPSNVQDSSQFPLMPISCLSDNRNYSVIASWSQPIVSSTVMPERCQVMSHALVPLPVLDMPMWPFWSDLNTDLELVWTEPRCSDCALSGQVCGFSDKKNQSLRVGCFPRDSGKGLSRSAKYGLAIGVGIPGLLCFIGVSCFVCGKFRTLSHRRRGTHLPITISLQPVPFAAGLDGATIEKYPKTLIGESGRLLKPSDNTCAICLSEYEPKETLRSIPECDHYFHADCIDEWLKLNGTCPLCRNSPETSTASFSSSSPTSSSFSSPQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04525 403 SUPERFAMILY RING/U-box 330 383 - -
Vimu11g04525 403 SMART ring_2 337 378 IPR001841 -
Vimu11g04525 403 Pfam Ring finger domain 335 379 IPR001841 -
Vimu11g04525 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 384 IPR013083 -
Vimu11g04525 403 Pfam Wall-associated receptor kinase galacturonan-binding 30 99 IPR025287 GO:0030247
Vimu11g04525 403 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 382 IPR046948 -
Vimu11g04525 403 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Vimu11g04525 403 MobiDBLite consensus disorder prediction 384 403 - -
Vimu11g04525 403 CDD RING-H2_EL5-like 337 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04525 Vimu-Chr11 66153262 66156184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04525 27 382 C3H Transcription Factor Family AT2G46495 36.813 3.32e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04525 - - gmx:100810240 593.964