Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04509 ATGGTCATTGCTTACTACACTTCATCACTCCCAGGATTTCATAAATTTCTTCAGCTTCAAACTCAACTGCAGAAAAAGAAACTATTGGTTCTAGATCCAAATAAACATCAAGCATCACCATCTCCTATCATTGCCACTATTATTATAAACAACACAAAAATGGCGAGTGAATGGAGCTGGGAGCAGAACACACTCATCAATGAGCTAATTCAAGGGATGGAGTTAGCAAGGAAGTTGAAGGAAGACTTGAGACTGCCGTATTCAGTTGACTCAAAAGATATGCTGCTGCAGAGGATATTATCTTCTTATGAAAAGGCTCTACTCATTCTAAGATGCAATGCATCAACTTCCGAGTTGCAGGCCACGAGTCAAGCAGCAGCAGCTTTGTTACCGGAGTCCCCAATATCTGTCCATGGAAGTCCTCTGAGTGAGGATCTTGATGGGGCCATCAAGGATCACCAAGAAATTCAACATGATTCAAAGAAAAGAAAGATAACGCCCAAATGGATGGATCATGTAAGAGTGAGCTGCGAGAGTGGTCTTGAAGGACCACAAGAAGATGGCTTCAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGAGCAAAATATCCCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGGGCTGTTGGGCAACGAAGCAAGTGCAGAGATCAGATGAAGATCCCACAATATTTGACATAACCTACAGAGGAAAGCATACCTGTTCTCAAGGAAACAACGCCGTTTTGCCACCTAAGTCACCAGACAAACAAGAGAAGACACACAGACATAACGTTGACATTCACCATGCACAGGCATCACAAGAAAGCCTTACAAAGTTCAGAAACATCTTGTCTGTCAACACAGATAAACTAGACAATGGAGATATGGCATATCCTTTCACTTTCCCTTCGACTTCATCTGGATGCATGAAACAATACAGCCACAGCTTGATTCCTGGGACCCTAGAGAATGAGTACTTCTTGAGCGATCAATACCAAACGCACCTGTTATCTCCAACAACACCGGAATCAAACTATCTCTCATCCCCAACTTTCCAGATGAATGAGTTTGATGGAATCTACAACAAGCCTTATTCAGACTCGGATATTAATGAGATCATTTCCACCAACACATCAGCAACCAATTCTCCGATTCCCGATTTCAATTTCTCACTTGATCCAGTGGAAATTGACCCGAATTTCCCTTTCAACACCCCAGGATTTTTCTCCTGA 1245 0.4257 MVIAYYTSSLPGFHKFLQLQTQLQKKKLLVLDPNKHQASPSPIIATIIINNTKMASEWSWEQNTLINELIQGMELARKLKEDLRLPYSVDSKDMLLQRILSSYEKALLILRCNASTSELQATSQAAAALLPESPISVHGSPLSEDLDGAIKDHQEIQHDSKKRKITPKWMDHVRVSCESGLEGPQEDGFNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYRGKHTCSQGNNAVLPPKSPDKQEKTHRHNVDIHHAQASQESLTKFRNILSVNTDKLDNGDMAYPFTFPSTSSGCMKQYSHSLIPGTLENEYFLSDQYQTHLLSPTTPESNYLSSPTFQMNEFDGIYNKPYSDSDINEIISTNTSATNSPIPDFNFSLDPVEIDPNFPFNTPGFFS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04509 414 Pfam WRKY DNA -binding domain 186 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04509 414 SMART WRKY_cls 185 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04509 414 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 57 329 IPR044810 GO:0003700
Vimu11g04509 414 Gene3D WRKY domain 172 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04509 414 ProSiteProfiles WRKY domain profile. 180 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04509 414 SUPERFAMILY WRKY DNA-binding domain 184 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04509 414 FunFam WRKY transcription factor 53 171 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04509 Vimu-Chr11 66038635 66040151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04509 59 309 WRKY Transcription Factor Family AT4G23810 46.350 3.98e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g04509 WRKY 8.9e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04509 - - gmx:100815760 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02394 7 20555063 20556289 Vimu11g04509 11 66038635 66040151 PCT