Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04505 ATGGGTGACACAGTTGTTCCGGTAGCCACGAAGAGGGGGAGGGGCAGAAAGGTCCTGAAGGATAAAACCCCATCAACAAATGAGGCCAACATCATCGCGGGGAAGGTTTCCGAGTCCTCAGTGACTCCAATTTCACCCTCGTCGAAACAAGATTCCAAGAAGGAGCAATCTTTCGAGAAAGAATTGCTCCAGATGCAGGAAATGTTACAGCAGATGCGCCTCGATAAGGAGAAGACTGAAGAGCTTTTGAAGGCCAAAGATGAGGCTCTGAAGCAGAAGGACGAAGAGCTCGAAAACCGTGGCCGTGAACAAGAGAAGCTTCAAGTTGAGCTGAAAAAACTGCAGAAATTGAAGGAGTTTAAACCAACTATGAATTTGCCTGTGATGAAAGATAATGAAACAAAGAAGGACAAGAAAAAGAAAGCAGGCGGCTCTGAGAAGAAAAGACCTTCTCCACCTTATATTTTGTGGATGAAAGACCAATGGAATGAGATAAAAAAAACGAACCCAGAGGCAGAGTTTAAGGAAACTTCTAACATGTTGGGGGCTAAATGGAAGACTGTGAGTGCAGAGGAAAAGAAGCCTTATGAGGAGAAATATCATGCTGAGAAAGAAGCTTATTTGCAAGTGATTGCAAAGGAAAAGCGTGAGAGTGAGGCAATGAGGTTGTTTGAAGAGGAGCAGAAACAGAGGACTGCAATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAAATCAAGAAGAACAAGAAAGAAAAGGATCCATTGAAACCAAAGCATCCCATGTCTGCATATTTCTTGTTCACCAACGATAGGCGAGCAGCTCTTCTTGCCGAAAACAAGAATTTCTTGGAGGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAGGAACAGAGGAGGCCTTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGCTTTAGAAATGGAAGCTTATAAGCAGAAGAAAGACGAGGAAGCTGCCCACCTCATGAAGGAGGAGGAGGAACATATGAAACTTCAGAAACAAGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGATAATATAATCAAGAAAACTAAACAGAATCGTCAGAAGAAGAAACAAAACAAGGAAGACAAGAACTCTGATCCAAACAGGCCTAAGAGGCCTCCATCATCTTTCATCCTATTCAGCAAAGAAGCAAGGAAAACTTTGCAAGATGAAAGATCAGGAATCAACACATCAACCCTTAATGCACTCGTCTCATTGAAGTGGAAGGAACTGAGTGAGGAAGATAGACAATTCTGGAATAGCCAAGCGTCTGATGCAATGGAAGCGTACAAGAAGGAGATGGAGGAATACAACAAATCTCTTTCTGCAAAAGCCGAATAA 1407 0.4257 MGDTVVPVATKRGRGRKVLKDKTPSTNEANIIAGKVSESSVTPISPSSKQDSKKEQSFEKELLQMQEMLQQMRLDKEKTEELLKAKDEALKQKDEELENRGREQEKLQVELKKLQKLKEFKPTMNLPVMKDNETKKDKKKKAGGSEKKRPSPPYILWMKDQWNEIKKTNPEAEFKETSNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVIAKEKRESEAMRLFEEEQKQRTAMELLEQYMQFKQEAEKEIKKNKKEKDPLKPKHPMSAYFLFTNDRRAALLAENKNFLEVPKITAEEWKNMTEEQRRPYEEMAKKNKEKYALEMEAYKQKKDEEAAHLMKEEEEHMKLQKQEALQLLKKKEKTDNIIKKTKQNRQKKKQNKEDKNSDPNRPKRPPSSFILFSKEARKTLQDERSGINTSTLNALVSLKWKELSEEDRQFWNSQASDAMEAYKKEMEEYNKSLSAKAE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04505 468 Pfam HMG (high mobility group) box 263 329 IPR009071 -
Vimu11g04505 468 Pfam HMG (high mobility group) box 148 209 IPR009071 -
Vimu11g04505 468 Pfam HMG (high mobility group) box 392 460 IPR009071 -
Vimu11g04505 468 Coils Coil 311 388 - -
Vimu11g04505 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 147 215 IPR009071 -
Vimu11g04505 468 MobiDBLite consensus disorder prediction 343 391 - -
Vimu11g04505 468 SUPERFAMILY HMG-box 134 210 IPR036910 -
Vimu11g04505 468 MobiDBLite consensus disorder prediction 1 61 - -
Vimu11g04505 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 392 460 IPR009071 -
Vimu11g04505 468 MobiDBLite consensus disorder prediction 130 147 - -
Vimu11g04505 468 Coils Coil 55 117 - -
Vimu11g04505 468 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 329 IPR009071 -
Vimu11g04505 468 MobiDBLite consensus disorder prediction 343 405 - -
Vimu11g04505 468 MobiDBLite consensus disorder prediction 24 51 - -
Vimu11g04505 468 MobiDBLite consensus disorder prediction 85 105 - -
Vimu11g04505 468 Coils Coil 226 257 - -
Vimu11g04505 468 Coils Coil 442 468 - -
Vimu11g04505 468 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 466 IPR044601 GO:0003677
Vimu11g04505 468 SUPERFAMILY HMG-box 387 464 IPR036910 -
Vimu11g04505 468 CDD HMG-box_AtHMGB6-like_rpt1 148 215 - -
Vimu11g04505 468 Gene3D High mobility group box domain 130 230 IPR036910 -
Vimu11g04505 468 Gene3D High mobility group box domain 246 345 IPR036910 -
Vimu11g04505 468 Gene3D High mobility group box domain 371 468 IPR036910 -
Vimu11g04505 468 SMART hmgende2 262 330 IPR009071 -
Vimu11g04505 468 SMART hmgende2 391 461 IPR009071 -
Vimu11g04505 468 SMART hmgende2 146 216 IPR009071 -
Vimu11g04505 468 MobiDBLite consensus disorder prediction 121 153 - -
Vimu11g04505 468 SUPERFAMILY HMG-box 250 335 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04505 Vimu-Chr11 66020729 66022989 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vimu11g04505 HMG_box 1.3e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04505 K09273 - gmx:100783033 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04505 11 66020729 66022989 Vimu11g04505 11 66020729 66022989 ECH