Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04500 ATGACTACAGAGACAAATTTTTCTGGTATTATTCACCTTGTCGTCATTGATGATGATGCTAGTGTTCTTATATCAATGACTACAGAGACAAATTTTTCTGGTATTATTCACCTTGTCGTCATTGATGATGATGCTAGTGTTCTTGCATTCGTCAAGGACTACCTCACCACAACATTATCCTCCGTGCAATGTGTTTGGTTTAATGTTACAACATTCTCAAACTCAATAGAAGGTTGGCAATATGTGCTGAATTGCCAAAAATCCAATATATCAATTGATTTCATAATGATGGAAACTCATATGCCGACTTTAGATGGCATTGAATTCATAGAGATGCTTATTGATGAGGATAAAATTGATATTCCAGTTATCCTAATTTCTAAGGATAACAGTGACAGTACTATATCTAAGGCCTACCAAGCAGGAGCAGATGAGTATTGGGAAAAACCTGTGACTGACTTTTACCTCAAACTTATAAAGAATAAGGCAATGAAGAGGGCAGCCACGAGATTAAAAAAGAGAAAGAGAAGGATAACATGGACTGATGAAATGGAAGGTCAATTTGATGAAGTTATTCAGCGTATAGGTCTAGAAGATGCTGAACCAGACAAAATACTTGAAGCACTGAAGGACAAAATACCTGGTCTGGAGGAGAAGCATGTTTCTAATCATTTAAAGACCTACGTAAAAAGGCTGGAAGTAGGAGCAACATCAGGAGCAACATCAGGTGCATCAGCAGAGCATCAGCAAGATCAGCAGGAGCATCAGCAGGAGCACCAGCAGGAGCATCAGCAGGAGCATCAGCAGGAGCACCAGCATGACCATCTTTAG 831 0.3935 MTTETNFSGIIHLVVIDDDASVLISMTTETNFSGIIHLVVIDDDASVLAFVKDYLTTTLSSVQCVWFNVTTFSNSIEGWQYVLNCQKSNISIDFIMMETHMPTLDGIEFIEMLIDEDKIDIPVILISKDNSDSTISKAYQAGADEYWEKPVTDFYLKLIKNKAMKRAATRLKKRKRRITWTDEMEGQFDEVIQRIGLEDAEPDKILEALKDKIPGLEEKHVSNHLKTYVKRLEVGATSGATSGASAEHQQDQQEHQQEHQQEHQQEHQQEHQHDHL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04500 276 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 261 IPR045279 GO:0009736
Vimu11g04500 276 SUPERFAMILY CheY-like 37 174 IPR011006 -
Vimu11g04500 276 Gene3D - 173 234 - -
Vimu11g04500 276 MobiDBLite consensus disorder prediction 236 276 - -
Vimu11g04500 276 SMART REC_2 36 159 IPR001789 GO:0000160
Vimu11g04500 276 Gene3D - 34 172 - -
Vimu11g04500 276 ProSiteProfiles Response regulatory domain profile. 37 164 IPR001789 GO:0000160
Vimu11g04500 276 MobiDBLite consensus disorder prediction 251 276 - -
Vimu11g04500 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 175 229 IPR006447 GO:0003677
Vimu11g04500 276 Pfam Response regulator receiver domain 39 152 IPR001789 GO:0000160
Vimu11g04500 276 SUPERFAMILY Homeodomain-like 173 233 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04500 Vimu-Chr11 65985797 65987046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04500 32 159 Response Regulator Gene Family AT4G16110 32.031 7.61e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04500 Response_reg 8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04500 - K14491 var:108330470 114.005