Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04496 ATGGCCGGAAGTTCTTCTTCTTCAATTGACATGCCTAAATTACCACCAAATTTTAATATCCTTGTCATTGATACTGACTGCAAAGTTCTTGAATTGATCGAGAAATCATGCAACGAGAATTCTCATCAAGTTACGACATGCTCTAAATCTTTAAGTGCGGTCGATCTTTTGTTGAAAAAAGAAATAGACTTTCATTTAATTATCATGGAACTCCATATGCCAACGATGGATGGCTTTGGATTTCTGCATTTTCTCAATAAAGAAGTAATTGATGTTCCTTTCATAATGATGTCTGAGGATAATTCTCACCCATCCCAAGAGAAGGCTATAACACTTGGAGTTTGCCATTATTGGGTTAAACCCTTCTTAGATTATACGTATATGTTCGAGAGGAATCTTTTAAGTTTATCTATGATACGACATCATTTCCACTGTAGGCGCATAAAGAAAAATATTGATAGCTTGGAAGATGATGAAATAAGTGAGACAAGTTATAGTTCTGATGGAGAAGCCGAAGCCGATGATTAA 528 0.3542 MAGSSSSSIDMPKLPPNFNILVIDTDCKVLELIEKSCNENSHQVTTCSKSLSAVDLLLKKEIDFHLIIMELHMPTMDGFGFLHFLNKEVIDVPFIMMSEDNSHPSQEKAITLGVCHYWVKPFLDYTYMFERNLLSLSMIRHHFHCRRIKKNIDSLEDDEISETSYSSDGEAEADD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04496 175 Gene3D - 16 135 - -
Vimu11g04496 175 SUPERFAMILY CheY-like 16 122 IPR011006 -
Vimu11g04496 175 SMART REC_2 18 129 IPR001789 GO:0000160
Vimu11g04496 175 Pfam Response regulator receiver domain 20 122 IPR001789 GO:0000160
Vimu11g04496 175 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 122 IPR045279 GO:0009736
Vimu11g04496 175 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04496 Vimu-Chr11 65952189 65952866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04496 2 121 Response Regulator Gene Family AT4G16110 35.000 5.14e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04496 Response_reg 1.1e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04496 - - vra:106765414 197.593