Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04490 ATGGCTTCGTCTGCCATCAAGCAAACACAACACCTTAACCGCACCAAACTCCTCGTCCAACAACACACCCTTTTGAAAAACCATCACCACCCCAAACTCGTGCGGATACGTGTCACCGACGCCGACGCCACGGACTCCTCCAGCGACGACGACCAGCCCTCCGTGTCCTCCACGCGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCGGAGTCAAAGTTGTTTCCAGGAAAAGAAAGGTAAAGTCTGGCGGCACTCCGGCTCTCCGGCGGCGAACTGGGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATAAGGGACCCGTCGCGCCGCGTGCGGCTGTGGCTGGGCACCTACGACACCGCCGAGGAAGCTGCCATTGTGTACGACAACGCCGCCATTCAGCTGCGTGGCGCCGACGCGCTCACTAATTTCATAACGCCCCCGGCGGAGGACAGAAAAAGCGGTTACTGCTCCGGCGAGGAGTCTCCGAGCGAGGAGCTGCGTTCCCCTACTTCAGTTCTTCGGTGCTGTTGGGCGTCCGAGGAAGCTGAGTCGGTAACCGCAAACGACGCGGTTGGTCCGGCGAGCGAATGCGAACATTCATGGTTTTCGGAGGACAGTAAGTTGAAAGATGAGTCAGTGTTTGGTATTCCTGAGGACGTTGTATTCGGATTTGAAAGCAGTTTGGATATGTTTGAGGAGTGCGATAAGAACGTTGCAGAGAGCAGTGGTATATTCATGGGCGATGAATTTGATTTGAGTGGATGCTTTGTTAGTGAGAAAGAGAATTTAGATTTGGGTTTTGGTTTTGGTTTTGGGTTTACGAGTTGGCAAAGAGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTTGTCTGGGATCCTCTTGTCGCTCTTTGA 939 0.5485 MASSAIKQTQHLNRTKLLVQQHTLLKNHHHPKLVRIRVTDADATDSSSDDDQPSVSSTRRRVKSFVNEITIHGAGVKVVSRKRKVKSGGTPALRRRTGARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPAEDRKSGYCSGEESPSEELRSPTSVLRCCWASEEAESVTANDAVGPASECEHSWFSEDSKLKDESVFGIPEDVVFGFESSLDMFEECDKNVAESSGIFMGDEFDLSGCFVSEKENLDLGFGFGFGFTSWQRECDNFQDIGDLFVWDPLVAL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04490 312 CDD AP2 101 157 IPR001471 GO:0003700|GO:0006355
Vimu11g04490 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 212 - -
Vimu11g04490 312 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700|GO:0006355
Vimu11g04490 312 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vimu11g04490 312 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vimu11g04490 312 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vimu11g04490 312 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vimu11g04490 312 MobiDBLite consensus disorder prediction 39 59 - -
Vimu11g04490 312 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
Vimu11g04490 312 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vimu11g04490 312 FunFam Ethylene-responsive transcription factor 2 100 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04490 Vimu-Chr11 65913126 65914987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04490 1 312 AP2-EREBP Transcription Factor Family AT4G23750 40.845 4.25e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu11g04490 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04490 - - gmx:100813992 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02403 7 20605404 20606369 Vimu11g04490 11 65913126 65914987 PCT