Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04489 ATGTGGGAAGGAAGTGGTGAGCCTCTTGAAGATAAGGAGGCGTTGCTTGAGTTTGTGAACAAGTTCCCTCCTTCCAGGCCTCTGAATTGGAATGAGAGTTCCCCCATGTGTGCTTCTTGGACTGGTGTGACTTGCAATGAAGACAAGTCCAGAGTAATTGCAATTAGGTTGCCAGGGGTTGGATTTCATGGCACTATTCCACCTGACACTATTAGCCGCCTCGCTGCACTGCAAACTTTGAGCCTCAGATCCAATGTGATATCTGGGCCTTTCCCTTCTGATTTTTCCAATCTAAAGAACTTGTCTTTCCTCTACCTTCAGTTCAACAACTTGTCTGGGCCTTTGCCTGATTTCTCGGCCTGGAAGAACCTCACTGTCGTCAATTTGTCCAATAACCATTTCAATGGCAGCATTCCTGTCTCCCTTAACATCTTGCCTCAGCTTTCTGGTTTGAACCTTGCAAACAACTCTCTTTCCGGGGAAATTCCTGACCTCAACTTGTCAAGATTGCAGGTGCTGAATCTGTCCAACAACAATTTGCAGGGAACTGTGCCCAAATCTCTGTTGAGGTTTCCTGAGTCTGCATTCTCCGGGAATAACATTTCCTTTGGAACTTTTCCCCCAGTTTCTCCGGCACCTCAGCCCGCTTTTGAGCCGGCTTTGAAGTCTAGGAGGCGTAGAAAGCTCAGTGAGGCGGCGCTGTTGGGAGTGGTTGTTGCTGCTGCTGTTTTAGGCCTCCTGGCTTTTGTTTCTTTGACTTTTGTGTGCTGCTCAAGAAGAGGCGAGGAAGATGAGGAAACCTTCGGTGGGAAGTTGCACAAGGGAGAAATGTCTCCTGAGAAAGCTGTCTCAAGGAATCAGGATGCAAATAATAAGCTGGTTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCCGCTGAGGTTCTGGGAAAGGGAACGTTTGGAACTGCCTACAAGGCAATACTAGAAGATGCTACCACGGTTGTTGTGAAGAGATTAAAGGAGGTAGCTGCTGGGAAGAAGGATTTTGAGCAGCACATGGAGATTGTTGGAAGTCTTAAGCATGAGAATGTTGTTGAGCTCAAGGCATATTATTATTCCAAAGATGAGAAACTCATGGTATATGATTATCACAGTCAGGGGAGCATAGCTTCCATTTTGCATGCCAAGAGAGGAGAGGAGAGGGTGCCTTTAGATTGGGATACAAGGTTGAAAATAGCCTTAGGTGCTGCAAGAGGCATTGCTCGTATCCATGTTGAGAACGGTGGAAAGCTGGTACATGGCAACATCAAATCCTCAAACATCTTTCTGAACACCAAACAATATGGATGTGTGTCTGACCTTGGTCTGGCAACCATATCAAGCTCACTGGCCTTACCAATATCACGAGCAGCCGGTTACCGGGCACCGGAAGTGACAGACACCAGAAAAGCAGCACAGCCCTCAGATGTTTACAGTTTTGGTGTGGTGCTGCTAGAGCTTCTGACCGGGAAATCCCCTATCCACACCACTGGTGGTGATGAGATTATCCACCTTGTGAGGTGGGTTCATTCAGTTGTGCGTGAGGAATGGACAGCTGAAGTGTTTGACCTGGAACTGATGAGATTTCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTGAGGATGCCTGATCAAAGGCCTAGGATGTCTGAAGTTGTCAAGATGATAGAAAATGTGAGGCAGATTGATGCAGACCCTTATTCATCGTCTGGGAACCAAGCTGAACAACTCAAATTGTCTCAACGTGACAGTGGTAACTCTCCTTCCACTCCCTCCTACTTCCCCAGAGAAAGTGAATGA 1866 0.4673 MWEGSGEPLEDKEALLEFVNKFPPSRPLNWNESSPMCASWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLAALQTLSLRSNVISGPFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGSIPVSLNILPQLSGLNLANNSLSGEIPDLNLSRLQVLNLSNNNLQGTVPKSLLRFPESAFSGNNISFGTFPPVSPAPQPAFEPALKSRRRRKLSEAALLGVVVAAAVLGLLAFVSLTFVCCSRRGEEDEETFGGKLHKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAAGKKDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYDYHSQGSIASILHAKRGEERVPLDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRFPNIEEEMVEMLQIAMSCVVRMPDQRPRMSEVVKMIENVRQIDADPYSSSGNQAEQLKLSQRDSGNSPSTPSYFPRESE 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04489 621 MobiDBLite consensus disorder prediction 586 621 - -
Vimu11g04489 621 SUPERFAMILY Protein kinase-like (PK-like) 314 578 IPR011009 -
Vimu11g04489 621 Pfam Leucine rich repeat N-terminal domain 10 46 IPR013210 -
Vimu11g04489 621 Gene3D Ribonuclease Inhibitor 10 119 IPR032675 -
Vimu11g04489 621 ProSiteProfiles Protein kinase domain profile. 310 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04489 621 Pfam Leucine rich repeat 65 111 IPR001611 GO:0005515
Vimu11g04489 621 Gene3D Transferase(Phosphotransferase) domain 1 386 604 - -
Vimu11g04489 621 PANTHER OS05G0588300 PROTEIN 10 590 - -
Vimu11g04489 621 Gene3D Ribonuclease Inhibitor 120 209 IPR032675 -
Vimu11g04489 621 Gene3D Phosphorylase Kinase; domain 1 276 384 - -
Vimu11g04489 621 SUPERFAMILY L domain-like 21 191 - -
Vimu11g04489 621 FunFam pollen receptor-like kinase 1 279 384 - -
Vimu11g04489 621 FunFam Probable inactive receptor kinase RLK902 9 166 - -
Vimu11g04489 621 Pfam Protein kinase domain 313 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04489 621 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 385 591 - -
Vimu11g04489 621 ProSitePatterns Protein kinases ATP-binding region signature. 316 347 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04489 Vimu-Chr11 65899133 65902031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04489 1 614 Receptor kinase-like Gene Family AT4G23740 65.176 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu11g04489 Pkinase 3.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04489 - - gmx:100804799 1086.25