Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04476 ATGGGTAACTGCAGCAGCAGCAGCAACGGCGGTGGTGCCGCCTCCTCAACTACCACTTACTCCGACGACCTTCCCCAGCGCAACGGCATCACCGTCCTACCCCCGAACACGAACCCTTCACCCCCACCCCCGAAGCCACAAGCGTCGTCCTCGCTGGGCCGGGTGCTGGGCCGGCCTATGGAGGATGTCCGGTCAATTTACATCTTCGGGCGCGAGCTGGGCCGTGGGCAGTTCGGTGTGACGTATCTGGTGACCCACAAGGTCACGAAGGAGCAGTTCGCGTGCAAGTCGATCGCAACGCGCAAGCTCGTGAACCGCGACGACATCGACGACATCCGGCGGGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAATATCGTGGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAATCTCGTCATGGAGCTCTGCGCTGGCGGCGAGCTCTTCGACCGCATTATCACCAAAGGCCACTACTCCGAGCGCGCCGCCGCCAACTCCTGCCGCCAGATCGTGACGGTGGTGCACAATTGCCACTCCATGGGCGTGATGCACAGGGACTTGAAGCCCGAAAATTTCTTGCTGCTCAACAAGAACGATGATTCCCCTCTCAAGGCCACGGATTTTGGTCTCTCAGTCTTCTTCAAGCCAGGTTAG 669 0.6114 MGNCSSSSNGGGAASSTTTYSDDLPQRNGITVLPPNTNPSPPPPKPQASSSLGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLVNRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLNKNDDSPLKATDFGLSVFFKPG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04476 222 SMART serkin_6 67 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04476 222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Vimu11g04476 222 Gene3D Transferase(Phosphotransferase) domain 1 153 222 - -
Vimu11g04476 222 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vimu11g04476 222 Gene3D Phosphorylase Kinase; domain 1 68 152 - -
Vimu11g04476 222 FunFam Calcium-dependent protein kinase 1 69 152 - -
Vimu11g04476 222 MobiDBLite consensus disorder prediction 1 34 - -
Vimu11g04476 222 Pfam Protein kinase domain 69 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04476 222 ProSiteProfiles Protein kinase domain profile. 67 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04476 222 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 220 - -
Vimu11g04476 222 SUPERFAMILY Protein kinase-like (PK-like) 67 221 IPR011009 -
Vimu11g04476 222 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04476 Vimu-Chr11 65809271 65809939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04476 53 222 EF-hand Containing Proteins AT4G23650 82.353 2.26e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu11g04476 Pkinase 8.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04476 K13412 - gmx:100777096 379.022