Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04452 ATGGATGAATTTGAGTGCTTGAGAGATTGGGATTTGGAGGCTATTGTCAGAGGAAGCAGTGGTGAAGCCACCGCCATGGACGATCCAAATCCTGATTTTTCTTATTTCTTCTCTGATCAAGACGAGTTGCTTGATAGCTTTCCAGAATTCTCAGAAACCACCAGGGTTCTTGATGATCTCGAAGATCTCTACAAACCTTTCTACCCAGTTTTGCACCCTCTTTCACCTCACACCATCGTTACAACTTCCCTCTCTATCCCCATAGAACCCCAACAGGTCAAAGAACTCAAACCATCAGATGAGAAAGTAGCCCTACAGGGTTTCAAAGCCCCCACAACACCAAAGTGTAAAAAAGGGAAGAAGAACCAGAACAAGAGTGTGGTGAAGCAGGTAACAACAGCAGAAGGTCTTGATGATGCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGTTCTCCATATCCAAGAAGCTACTATAGGTGCAGCAGTTCAAAAGGGTGTTTGGCGAGGAAACAGGTTGAAAGGAGCCACTTAGATCCTGCTGTTTTTTTGGTTACCTACACTGCTGAACACAGCCATCCTCACCCAACTCGAAGAAACTCTCTTGCTGGGACCACTAGGAAGAACAATTCCCTGATTCCACCTCCAACAACCACACGCAACCACAACACTACTTGTTCTTCAAGGACACCTTTGATGGTTCAATCCATTGAAGATAAACTTGTAACGAGTGTGCAACAAAGCATGGACCTGAAGAAAGAAGAACAACATTTTGTTGAGTGGTTCGATGATGGTGCTCAATTTGGTGATGCTTGGATTCCAACCTCAGATCTGGAGAAGTTTATTGGATTTGAATGCCAACATTTTGCACTGGATGGAGGTTTCAGCGATGGTTATGCACACTCTTGA 915 0.4448 MDEFECLRDWDLEAIVRGSSGEATAMDDPNPDFSYFFSDQDELLDSFPEFSETTRVLDDLEDLYKPFYPVLHPLSPHTIVTTSLSIPIEPQQVKELKPSDEKVALQGFKAPTTPKCKKGKKNQNKSVVKQVTTAEGLDDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSHLDPAVFLVTYTAEHSHPHPTRRNSLAGTTRKNNSLIPPPTTTRNHNTTCSSRTPLMVQSIEDKLVTSVQQSMDLKKEEQHFVEWFDDGAQFGDAWIPTSDLEKFIGFECQHFALDGGFSDGYAHS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04452 304 Pfam WRKY DNA -binding domain 138 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04452 304 MobiDBLite consensus disorder prediction 194 226 - -
Vimu11g04452 304 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04452 304 MobiDBLite consensus disorder prediction 200 226 - -
Vimu11g04452 304 SUPERFAMILY WRKY DNA-binding domain 131 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04452 304 Gene3D WRKY domain 119 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04452 304 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 64 229 IPR044810 GO:0003700
Vimu11g04452 304 ProSiteProfiles WRKY domain profile. 132 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04452 304 FunFam WRKY transcription factor 22 120 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04452 Vimu-Chr11 65621927 65622936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04452 1 273 WRKY Transcription Factor Family AT4G23550 44.643 5.22e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g04452 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04452 K13426 - gmx:102663255 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02426 7 20778539 20779187 Vimu11g04452 11 65621927 65622936 PCT