Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04446 ATGAACATCAAAAAATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACGGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCACTGTCTTCAACCACTATTGCACAAAGTATCGATCACAATTCTTCCCAGTTCAGCTACAGTTCCAATCTGCTTGGCCATTTTTCTTCCAACCTGGATAATCCACAGACAAAACCACCACTTCAAGAAACCTTGTTTTCCTCGACATGCCCTCTGTTCATGTTTGACACGCCTTCACTGGAAGGCCCAGCGGCAGACTGCAACAGTGTGCGAGCTGAAAATTTTCAAGATGCAGTGGGGTTGAGCACTGAAACGTGGAACCTGAGCCACCATCAGGTTCAGGCACTTCCTCCTCTAACAGTGACTGTGGGCTTGGATACCACAAATTATTTGCCACCATTGATAGAGAACGTGGACAACATGGTCCCGATTGAGGTACAACCTTGTCCCATGGACGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGTTTAAATGAATGGGTGGAAACGCAGCAGCAATGTCCTAACTTTCTCTTTTGGGACAGTGTTGAAGGACATATTGGTGGGGAAGAACTAGGCACAAATTCGGCGAATGTGGAAGCAAACACACTTTCTCCTTTTCCTTCTTCTTTGTGA 693 0.4502 MNIKKWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSLSSTTIAQSIDHNSSQFSYSSNLLGHFSSNLDNPQTKPPLQETLFSSTCPLFMFDTPSLEGPAADCNSVRAENFQDAVGLSTETWNLSHHQVQALPPLTVTVGLDTTNYLPPLIENVDNMVPIEVQPCPMDEQGDIALECLQRQGLNEWVETQQQCPNFLFWDSVEGHIGGEELGTNSANVEANTLSPFPSSL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04446 230 CDD SANT 4 29 IPR001005 -
Vimu11g04446 230 Pfam Myb-like DNA-binding domain 4 28 IPR001005 -
Vimu11g04446 230 SUPERFAMILY Homeodomain-like 4 38 IPR009057 -
Vimu11g04446 230 Gene3D - 1 55 - -
Vimu11g04446 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Vimu11g04446 230 ProSiteProfiles Myb-like domain profile. 1 29 IPR001005 -
Vimu11g04446 230 PANTHER MYB DOMAIN PROTEIN 55 5 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04446 Vimu-Chr11 65550962 65552895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04446 5 214 MYB Transcription Factor Family AT1G63910 36.803 1.62e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g04446 Myb_DNA-binding 9.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04446 K09422 K02947 gmx:100803556 315.464