Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04445 ATGCAGAGTTTCAAATCTCGGGAGTACGTGAGGGAGACCTTTGCTTGGATGCATTACTACTGGTTCCTCACCAACGATGGCATAGAGTTTCTCAGAACTTATCTTAACCTTCCTTCCGAAATTGTCCCTGCCACTTTGAAGAAACAGGCCAAACCACCTGGCAGGCCCTTTGGCGGCCCATCCGGTGATCGCCCTAGGGGTCCACCACGCTTTGACGGCGAGCGTAGATTTGGTGGTGATCGTGATGGGTACCGTGGAGGTCCCCGAGGCGGTGGGGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGATTACAGACCCACTTTTGGGGTAATCGTTTTTTCCACTGCAATTCATTTTTTCTTATCTGTTTAG 375 0.5147 MQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFDGERRFGGDRDGYRGGPRGGGDFGGDKGGAPADYRPTFGVIVFSTAIHFFLSV 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04445 124 Pfam Plectin/S10 domain 1 49 IPR005326 -
Vimu11g04445 124 PANTHER 40S RIBOSOMAL PROTEIN S10 1 110 IPR037447 -
Vimu11g04445 124 MobiDBLite consensus disorder prediction 46 100 - -
Vimu11g04445 124 MobiDBLite consensus disorder prediction 67 87 - -
Vimu11g04445 124 Gene3D - 1 59 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04445 Vimu-Chr11 65546742 65547321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04445 1 107 Cytoplasmic Ribosomal Protein Gene Family AT5G41520 85.047 3.82e-47 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04445 K02947 K09422 gmx:100499910 123.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02431 7 20823014 20824861 Vimu11g04445 11 65546742 65547321 PCT