Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04444 ATGGCCACAAAAGGGTCAAGCTCTTCTGCTGCCGCTTCAGCTTCTGGGGATGCAAAAATCAAAAGGGTTCTTACACACGGTGGCAAATATGCACAGTACAATGTGTACGGTAACTTGTTCGAGGTGTCTTCCAAGTATGTGCCTCCTATTCGCCCAATTGGTAGAGGCGTTAATGGCATCGTCTGTGCTGCTGTTAATTCCGAAACACACGAACAAGTTGCCATCAAGAAGATTGGTAACGCGTTTGACAATATAATTGATGCTAAGAGGACATTGAGAGAAATCAAACTCCTTCGTCACATGGAACATGAAAATATCATTGGCATCAAGGATATCATACGACCCCCCAAAAGGGAGACCTTCAATGATGTGTACATTGTTTACGAGTTGATGGACACTGATCTTCATCACATAATTCATTCTGATCAACCTCTTGGTGAAGAGCATTGCCAGTACTTCTTATACCAGCTGTTACGGGGGCTGAAATATGTGCACTCAGCTAATGTTTTGCACCGTGACCTTAAGCCCAGTAATTTACTTATGAATGCAAACTGCGACCTTAAAATTGGGGACTTTGGGTTGGCAAGAACAACAACTGAAACAGATTTCATGACAGAGTATGTAGTCACACGATGGTACCGTGCCCCAGAATTGCTCCTTAACTGTTCCGAGTACACCTCTGCAATTGATGTTTGGTCTGTTGGGTGCATACTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGCAAAGACTATGTTCACCAATTAAGGCTTATAACAGAGTTATTAGGTTCACCGGATGATGCAAGCCTAGAATTTCTCCGGAGTGATAATGCCAGAAGATACATTAGACAGCTTCCACAGTACCGGAAGCAAAAATTCTCCGCCAGATTCCCTAACATGTTGCCTGAGGCACTGGATCTGTTAGAGAAGATGCTTATATTTGATCCAAACAAACGCATTACAGTTGATGAGGCACTATGTCACCCTTATCTTTCATCACTTCATAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAACGTGCACTGAAGAGCACGTGAAGGAGCTCATTTGGAGGGAATCAGTGAAGTTCAATCCAGATCCACCCTGCCAGTAA 1146 0.4354 MATKGSSSSAAASASGDAKIKRVLTHGGKYAQYNVYGNLFEVSSKYVPPIRPIGRGVNGIVCAAVNSETHEQVAIKKIGNAFDNIIDAKRTLREIKLLRHMEHENIIGIKDIIRPPKRETFNDVYIVYELMDTDLHHIIHSDQPLGEEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCDLKIGDFGLARTTTETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCILGEIMTREPLFPGKDYVHQLRLITELLGSPDDASLEFLRSDNARRYIRQLPQYRKQKFSARFPNMLPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNINDEPVCPRPFSFDFDQPTCTEEHVKELIWRESVKFNPDPPCQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04444 381 CDD STKc_TEY_MAPK 40 376 - -
Vimu11g04444 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vimu11g04444 381 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04444 381 Gene3D Transferase(Phosphotransferase) domain 1 131 360 - -
Vimu11g04444 381 FunFam Mitogen-activated protein kinase 131 360 - -
Vimu11g04444 381 ProSitePatterns Protein kinases ATP-binding region signature. 53 77 IPR017441 GO:0005524
Vimu11g04444 381 Gene3D Phosphorylase Kinase; domain 1 30 370 - -
Vimu11g04444 381 SMART serkin_6 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04444 381 FunFam Mitogen-activated protein kinase 32 142 - -
Vimu11g04444 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 45 335 - -
Vimu11g04444 381 Pfam Protein kinase domain 51 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04444 381 ProSitePatterns MAP kinase signature. 82 185 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu11g04444 381 SUPERFAMILY Protein kinase-like (PK-like) 50 341 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04444 Vimu-Chr11 65539495 65542255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04444 6 376 MAP Kinase Gene Family AT4G01370 80.323 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu11g04444 Pkinase 6.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04444 - K20600 gmx:100807109 758.059