Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04440 ATGGCTCGACAATTGTGTGAAGACAAATCCAAGGACATGGTTTCATCAACTGGTCTGTTCTACCCTGATGTGTCATCAAACAGCCCAACTCTCCAACCCCATCTGATGAACCACATCCATGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCATCCACACAGTGAAAGCAACGGGGTCATGTGGAAAAGTTTCTTCGGCAAACCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACTATGAACGAGTCCTCTTGCAATTTTTATAACCAGCACGAGTATAGTAATAAGCAAGACTTCACATCAGGGATTTCTGAAACAAGTAGCGAAAATTTAATAGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGCTAATGCTTGATGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAGGTAACGAAAGGCCCAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCGAGTATTGGGTTGCAATCTTTCGAGCTAAGACAAACAAACCATCATCAGCATCTTTCTGATTTTGTTTCGAGAGACGGGTATTTTGGAAAACCGGTCAATGCTCAACAACAGCAACAAGTGTTGCAAGACGGGTACATGAGTCCTAACAAAGCTGCAAACATTTATCAGGGACATTTTCTAATCAAGAACTCTAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTGGGAACAAAGGACAATGATGTGCAAAAGCAGAAGCAGTCTCTAAAGAACAAGCCGTGGGAAGAGGGTAACAACGGTGGTGGTTCCTCAAAGAACCATTCTCTTGGGTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAGGCTGCTATCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACTGTAACCAAATGAAGGCAGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGAGCAGCCACAGTTTATTCGGCTTTGGCTTTGAGAGCCATGTCTCGCCATTTTAGGTGCCTGAAAGATGGAATCATGGAACAAATTCAAGCCACCAGAAAAGCAATGGGAGAGAAAGATCCCGTTGCACCAGGAACAACAAGGGGCGAAACACCGAGGCTTAAAATCATTGATCAATCACTGAGACAACAAAGGGCCTTTCAACAAATTAGCATGATGGAAACTCATCCCTGGAGACCTCAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTCGAGCACTTTCTTCACCCGTACCCAAGTGATGTCGATAAACACATCCTAGCCCGCCAAACTGGTCTCTCCAGAAGTCAGGCACGTGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTGTGGAAGCCGATGGTGGAGGAGATGTACTTGGAAGAAGAGAAGGAGCAACAGAACGACGTCGCATCGTCGGAGGGAGGAGGCACCAATCCCGAGGGGGATCAGAACGCGGCACGCGAGGATCAGAAACCGACGCAGGCTCGGCTCCTTCGAATTGACTCGGAGATGTCGTCCATGGTGAGCAACACGGAGCACAAAAACGACAGCAAGAGCGGGAAAAGCGTCCAAAACGACGAGCAAATGAATGAGAGCAACCATCCCGCGGAGGCGTTCGGGTCGGTGGAGCTTGACTTTTCGTCATACGCGCAGCACTCCTCCGGTGTGGTTGGTTACGATGGTGACAGCGGGAACGAGAGGTTCCAGGGTGGCGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGCGGGGTGAGTTTAGCGTTCCCGCCAGCGACTCAAAGCTCGATGTTCTACCCACGGGACCAGATAGAAGAGTGTCAAACAGTTGAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGGTATGA 1992 0.49 MARQLCEDKSKDMVSSTGLFYPDVSSNSPTLQPHLMNHIHGFVTDPEMFNLTTGMEMIGFSKNLHPHSESNGVMWKSFFGKPSQHAGPSSSKTMNESSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMLDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFVSRDGYFGKPVNAQQQQQVLQDGYMSPNKAANIYQGHFLIKNSKFLVPAQLLLNEFCSLGTKDNDVQKQKQSLKNKPWEEGNNGGGSSKNHSLGSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKAVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMEQIQATRKAMGEKDPVAPGTTRGETPRLKIIDQSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQARVSNWFINARVRLWKPMVEEMYLEEEKEQQNDVASSEGGGTNPEGDQNAAREDQKPTQARLLRIDSEMSSMVSNTEHKNDSKSGKSVQNDEQMNESNHPAEAFGSVELDFSSYAQHSSGVVGYDGDSGNERFQGGGGGVSLTLGLQQQGESGVSLAFPPATQSSMFYPRDQIEECQTVEYSLLDGEGQNMPYRNLMGTQLLHDLV 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04440 663 ProSiteProfiles 'Homeobox' domain profile. 409 474 IPR001356 GO:0003677
Vimu11g04440 663 MobiDBLite consensus disorder prediction 482 515 - -
Vimu11g04440 663 MobiDBLite consensus disorder prediction 271 286 - -
Vimu11g04440 663 SMART HOX_1 412 478 IPR001356 GO:0003677
Vimu11g04440 663 SUPERFAMILY Homeodomain-like 413 480 IPR009057 -
Vimu11g04440 663 CDD homeodomain 412 475 IPR001356 GO:0003677
Vimu11g04440 663 Gene3D - 415 479 - -
Vimu11g04440 663 SMART prehox3 229 361 IPR006563 -
Vimu11g04440 663 Pfam Homeobox KN domain 429 470 IPR008422 GO:0003677|GO:0006355
Vimu11g04440 663 Pfam Associated with HOX 235 359 IPR006563 -
Vimu11g04440 663 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 132 508 - -
Vimu11g04440 663 MobiDBLite consensus disorder prediction 261 286 - -
Vimu11g04440 663 MobiDBLite consensus disorder prediction 529 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04440 Vimu-Chr11 65496794 65499951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04440 138 663 Homeobox Transcription Factor Family AT5G41410 48.084 1.21e-137 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04440 - - gmx:100792789 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02435 7 20864224 20867239 Vimu11g04440 11 65496794 65499951 PCT