Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04438 ATGGCAGCGACAACTACAACAACTTTCCTCAAACTTCAAAACCAGCCCACCAAGCCCAAACGACGCAAGTATCGAGAAACGACAATCTCAGCTGCCGCTTCTCCAAGCCACACCCAAACAATTCCTCATCGTCGCACTCCACAATCCCCTATATGTTCCCAAACCCCATCCAAGCCCCAACCCGAACCCGAACCACCTGCATTGCCCGAATCACCCTCCACCCACACCATCCCATTCTCCCCGGGGCGCTTCTCCCCGATAATGGACTTCACTCACTCCTCCCCCACCGCCAACGGCCACCACCCCTCCCACCCACAGGCCCACGACTTCCCCTCCAGCTTCTCCAAGTTTAACTCCGCCCTCACCGCCGGCCTTTTGAACCCAATGTCCCCCCCGCCAGACAAGACCCGATCCAGCCCCACGCTCTTCGAAATGATGGCCAGCGAGCCCGATGTCCACCACAGGCCCACCACCCACATCCCGCCCACCACCGTCGCCGCCGCCGCCGCCGCTGCGTCGTCGCTGCACAAACCCCAGATTCTCGATCGCCACGCCCTCATGATGCAGCGGATTTCGGAGCTCTTGGGGTCCCGCAGCCCCGGGAACCAGTTCAACGATGCCGCTTCCAGCGATATCAAGCTCACGCTCAGCTCCAAAGACGGAATCAGTGTCTCCATGAACGTGCATCGCCAAATCCTCGTCGCGCACAGTAGGTTCTTCTCGGTGAAGCTCTCCGATCGCTGGACCAAGCAGCAGCAGCAGCGGTCGCCGGTTCCCTACGAAGTTGAAATCGCCGATTGCGACGATGTGGAGGTTTACATCGAGACCTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTCATGAGAGAGGATGTCTCCAGAGTTCTCGGTATCTTAAAGTTGATGGATGAAATTCTGCTGTTTAGGTTATGGGTTTGGCTATTTATTACGCCGGTTTCAGCTGCCATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACCTGGAAGCGGCACCTTGGGCCGAGGATGAGGAAGAGAAGGTGGCATCGCTCCTCTCTGAGCTTCGTCTTGAAGCGGTTGGTGCAGGGGAGGTTTTGAAGAGGGTTTCAACTGATGCTGCTGCCAATGGAAATGAAGAGGGGAGTGATAATGAGGAGGTTCTTCTTAAGCTTATTCGTGTGGTTCTTGAAGGCAAGGATGAGAAGGCCAGGCGTGAGATGAAAGGGTTAGTGTCGAAGATGCTGCATGAAAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGCTGTACTTAGCATGTGATGATTGTCTGCAGTTACTTCGTGACCACTTTTTGCAGGCTGCGGGTTCGCATTTGCAGGATGTGAGTCAAATTGCAAGACAAGCAGACAATTTGCATTGGATTTTGGATATTTTAGTTGATAGACAGATTGCTGAGGATTTCCTGAAAACATGGGCCTCTCAAGCAGATTTGGCTGAAGCTCATTCTAAGGTGCCAGCAGTTCACAGGTTTGAGGTTAGCCGAGTTACAGCAAGGTTGTTTGTTGGGATTGGCAAAGGACAGTTGTTGGCTTCTAAAGATGTCAGGTGTTTGCTTCTAAAAACATGGTTGGTACCCTTTTATGATGACTTTGGTTGGATGAGGAGGGCATCCAAGGGGCTTGATAGGCACCTAATTGAGGATGGTCTTAGTAACACTATTCTTACTCTGCCACTCTCCTGGCAACAAGATATTTTGCTTGCTTGGTTTGATCGTTTCTTGAATTCCGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGAAATGGAGAGCAAGAACGGACAAGACAATTACGAATTACAACTACATCGGTTGAGAACCCTTGA 1905 0.5144 MAATTTTTFLKLQNQPTKPKRRKYRETTISAAASPSHTQTIPHRRTPQSPICSQTPSKPQPEPEPPALPESPSTHTIPFSPGRFSPIMDFTHSSPTANGHHPSHPQAHDFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDVHHRPTTHIPPTTVAAAAAAASSLHKPQILDRHALMMQRISELLGSRSPGNQFNDAASSDIKLTLSSKDGISVSMNVHRQILVAHSRFFSVKLSDRWTKQQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKLMDEILLFRLWVWLFITPVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEAVGAGEVLKRVSTDAAANGNEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLHENSSQNDLRKESLYLACDDCLQLLRDHFLQAAGSHLQDVSQIARQADNLHWILDILVDRQIAEDFLKTWASQADLAEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSWQQDILLAWFDRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSVENP 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04438 634 MobiDBLite consensus disorder prediction 54 72 - -
Vimu11g04438 634 MobiDBLite consensus disorder prediction 1 15 - -
Vimu11g04438 634 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 193 620 IPR038920 -
Vimu11g04438 634 Pfam BTB/POZ domain 203 300 IPR000210 GO:0005515
Vimu11g04438 634 MobiDBLite consensus disorder prediction 87 101 - -
Vimu11g04438 634 ProSiteProfiles BTB domain profile. 210 289 IPR000210 GO:0005515
Vimu11g04438 634 MobiDBLite consensus disorder prediction 29 53 - -
Vimu11g04438 634 Gene3D Potassium Channel Kv1.1; Chain A 189 314 IPR011333 -
Vimu11g04438 634 MobiDBLite consensus disorder prediction 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04438 Vimu-Chr11 65475253 65477569 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu11g04438 BTB 0.00016 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04438 - - ccaj:109800730 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04438 11 65475253 65477569 Vimu11g04438 11 65475253 65477569 ECH
Vimu11g04438 11 65475253 65477569 Vimu10g01751 10 24459877 24462067 PCT