Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04436 ATGGGTTTCCCTGTGGGCTACACGGAGCTTCTCTTTCCGAAGCTTCTCCTCCAACTCCTCTCCCTCTTGGGCTTCCTCCGGAGGCTCATTTGCACCGTTCTCCGTTTCATGGGCCTCCACGATTTCCTCGAGCCCGACATTACTTGGCCCGAAGCCCACACCGGAATGCCAGAATTGGAATCCGTTTCCGCAACGTTTATCCGGGAAATCCTCCCCGTAGTGAAGTTCCGCGACCTCCTCGACCCACCCGAAACCTGCGCCGTCTGTCTCACGGAGTTCGAGAAAAACGATGAGATCAGACGGCTCGCCAACTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGTTACGATCAGAAAACGTGCCCTCTTTGCAGAACACCCTTCATACCAGACGATATGCAAGGTACTTTCATTGAAAGACTCTGGGCTGCGTCTGGGATCTCTGAGCAGCCTCTTGTTCCTGCTTCCTAG 483 0.5445 MGFPVGYTELLFPKLLLQLLSLLGFLRRLICTVLRFMGLHDFLEPDITWPEAHTGMPELESVSATFIREILPVVKFRDLLDPPETCAVCLTEFEKNDEIRRLANCRHIFHRGCLDRWMGYDQKTCPLCRTPFIPDDMQGTFIERLWAASGISEQPLVPAS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04436 160 SMART ring_2 86 128 IPR001841 -
Vimu11g04436 160 SUPERFAMILY RING/U-box 67 135 - -
Vimu11g04436 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 147 - -
Vimu11g04436 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Vimu11g04436 160 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Vimu11g04436 160 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04436 Vimu-Chr11 65460784 65461900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04436 1 160 C3H Transcription Factor Family AT1G63840 56.024 2.97e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04436 K16281 - gmx:100789020 253.062