Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04433 ATGTCTTCTGATCTCTACTCTTACGACACCACTTTTCACTCACATTCAAACTCAGACTTTCTCTCCTCTGATGGAGTTGGAGACCTTCCTTTTCTCTCTGACTCTTTTCCTTTCTTCCCCAATTCTCCCTCTAACGTAGCTCACGACAATTCCAATTCCAATTCTCTCCCTTCTCTCGACCCTTTTTCCCCATCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGTCTCAGCCTTTACCATGCCAACCGCGTGCAACCCCTGTCAAATGGCCAAAACTTGGCGAACGAGTTTGGAACTTTCTCAGCTTTTGATGGCTCTGAAGTGAAGACTGAGGAAGCCCAATTGGGTGTTGACTGTGTCTACGCTCAACAACTCCTTCCTCACAGTTACAGTGGTGCTGAAAATTTTTCCAGGTACATGCACAGAAGCTTCAGCAGCAACTCCTTTGAAGCAAAACCAGGTTTTCTGTCACAACCTTATACTGATACTCTTGTGGACTCTCCCAAATTTCAAAGGCATGACTTGAGTTCCCCTGAAGACACTCTTTTCACCGGACAAATGAGAAGGGTTTGTAGCACCGGAGATTTGCAGAACATGAAGGAAAATCGCATGTCTCCAACGGAGGCACCGTTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAAGAGAGAAAAGAAAGAATCTCGAAATACAGAGCCAAGAGAACCCAGAGGAATTTCAACAAGACAATTAAGTATGCATGCCGAAAGACACTAGCAGATAATCGACCACGCATACGTGGCAGATTCGCCCGCAACGACGAAGCCATCGACAATCCCAAGGCTTCATGTTCAACACGAGACGAAGATGATGTTGATTTCTGGATTGAAGAATTACGATTGCATGAAGAACAAGACGATGTAACAGTGGGAGCAGAACAATATTTGAGAAGGTATGGAGCAACTCAGTTTCAGTATGGTGGCTTTTGA 987 0.4519 MSSDLYSYDTTFHSHSNSDFLSSDGVGDLPFLSDSFPFFPNSPSNVAHDNSNSNSLPSLDPFSPSFFSFSPPSSHLESLSLYHANRVQPLSNGQNLANEFGTFSAFDGSEVKTEEAQLGVDCVYAQQLLPHSYSGAENFSRYMHRSFSSNSFEAKPGFLSQPYTDTLVDSPKFQRHDLSSPEDTLFTGQMRRVCSTGDLQNMKENRMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEAIDNPKASCSTRDEDDVDFWIEELRLHEEQDDVTVGAEQYLRRYGATQFQYGGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04433 328 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 52 287 IPR045281 GO:0009909
Vimu11g04433 328 Pfam CCT motif 230 272 IPR010402 GO:0005515
Vimu11g04433 328 ProSiteProfiles CCT domain profile. 230 272 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04433 Vimu-Chr11 65436331 65438091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04433 226 274 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 2.12e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04433 CCT 9.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04433 - - gmx:102665661 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02440 7 20902142 20903597 Vimu11g04433 11 65436331 65438091 PCT