Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04431 ATGCGAGGAGGAATGACGAAAGCTAACGAAGGGGTTTCATTCTCGCTCGCCACTTCAATCTTTCTGCTGATTTCGGACTCATTACTTGCTCATATCCCCTCCTTTTCCGTGCTTTTCAGCTCAGCTATTGGATACTGGTTTGATTTATTGTTGCGGGACATGCATCGATTTCACTGTTTTGTGGTTAGAAAAGTTTCCACTTATATTCAGTGCTTTATTTCTCTTCAACAAAACCGAAAAGGAGGGAAAGACATGGATTGTGTGATAGACAGATTTGGCACGGAAGATGCTTGTAACTTGGTTTGCAACCTACTGAGAGAAGGTTTAAGAATGTTCTCAATGAAGTCTATTCGTTATCCAAGAGCACCAGAGGAGCACGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTGCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACGTCGTCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACGTTTGGTACCACTCAAACTCCGCCTGCAGCTCAAGAAATTCGTAGTGACAAGAATAATGCACCTTTGCTTTCTACAGATTCTAGTGCAATTCAAGAACCAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGGCTGATCTAGAGATAGATTCTGCTAAGGGTTCTGAAATTGAACTTGCAAAGTCTGGAAAACCTGTAATTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAAGTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA 924 0.4242 MRGGMTKANEGVSFSLATSIFLLISDSLLAHIPSFSVLFSSAIGYWFDLLLRDMHRFHCFVVRKVSTYIQCFISLQQNRKGGKDMDCVIDRFGTEDACNLVCNLLREGLRMFSMKSIRYPRAPEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPAAQEIRSDKNNAPLLSTDSSAIQEPVSGDNHGTPVKMEELKESECKVQADLEIDSAKGSEIELAKSGKPVILVEEEDTCPICLEEYDAENPKLATKCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04431 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 302 IPR013083 -
Vimu11g04431 307 MobiDBLite consensus disorder prediction 188 204 - -
Vimu11g04431 307 MobiDBLite consensus disorder prediction 188 209 - -
Vimu11g04431 307 SMART ring_2 256 296 IPR001841 -
Vimu11g04431 307 SUPERFAMILY RING/U-box 249 303 - -
Vimu11g04431 307 Pfam Ring finger domain 254 296 IPR001841 -
Vimu11g04431 307 FunFam Putative E3 ubiquitin-protein ligase RHB1A 233 301 - -
Vimu11g04431 307 CDD RING-H2_AIRP1-like 252 300 - -
Vimu11g04431 307 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 133 303 - -
Vimu11g04431 307 ProSiteProfiles Zinc finger RING-type profile. 256 297 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04431 Vimu-Chr11 65408172 65412485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04431 119 303 C3H Transcription Factor Family AT5G41350 52.660 1.02e-57 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04431 - - vra:106765380 373.629