Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04429 ATGCTCCATATTCTCAGGTTTCAGGTTTCATCTTTGATCTTGTCTCTCGCCTTTGCCTTTCATATTATTATGGGATGCCCTCAACAGCCAGCCAAAGACTTGATCACCAGGGAATCGAAGTTCATGGAAGAATGGTCAACATTCTCAAATGGGCCTTCTTTAGATTCCCTTGGAGTTGAAACAGCTGGTGAATTTCCTGGAAATGGTTGTTGTCCTGGAGATGGCCATGTTGATAATGGTGCTCCTCACGGTAAACTTACACAAAAATGCCTGTTCTATCAACTTTACCCTCTTTATCTGAAGGATAATTGTTCCCAAGCTGGTGCTCGGCCTTTGCTGGTTTTGGTTGATGGACAACAGCTCGATTTGTATAAACTCTTCTCCCTTGTGAAGGAAAGGGGTGGATGTGCTGAGGTGTCGAAAAATGGATCGTGGGGTTCTGTGGCCAAGGGATTGGGTTTGAACCTTGAAGTTTACTCGCCGGTGAAATTAGTGTACCATAAGTATCTAAATGATTTTGAAAGGTGGCTAAAGAAGTTTTTTGAAGAGAAGATTTTAAAAAATGGGAATCATGGGTGTGATTGGGGTTTGGAGTGGTTGCCATTGGATATAGAGAAAGAGTTCAGAGGCCTGTTATGTCTAAATCCAAAGAACAAAGCCGATGATGAACTTTTCAAGTCAAAATCAAATAAAAAAAAGAAAAACACTGATTTGGTTAACCACAAGAATGGTAATAATCTATTGGACACCAAAGATAAAAATAATGAATCTGAGGATGTCCAACACATTGAAGGTGACAATAATGAAAAATCCAGTAATGGAATTAAGGACAATCATGCAACCTTGGGTGCAGAATGTGCTGACAAGGAATGTAACCTTCTCAAACGCAAGCGGGATGCATTCTCCGGCATGCTAAACTGGATGAAGAATATTGCAAAACATCCTCTTGATCCTTTACCTCGACCGATACCGAAACCATCAAAGTGGAAGGAGTGTAAAGGCCGTGGCTTTTTTGGTCAATTTCTGAAGGCAAGAGAGGTTCTGTCACTGAGAAATCATGAAGAACCAAACAGTGGATTGTCTTCTTTGCAGGAAGTCATTAGTGGCTTTAAGAGTGCCCCATTAGAAGTTACCCTATCCAATAAGCAGAAGATACATCCTGCCATGTTCGAGGATCATGTTGCCCTTGATCGCCATGCTACAGGAAAATCGAGATGCAGTGAAAGGCTGCCTTCGTCTGTTAAATCTCGGTCATGCTCTTGCTGCAATCCATGTTCTCACAATGGAAATACATTGGCAGGTTCACATAATAAGGTGGAAGAAAATTGTCCTCATGAGAAAACAACTGAAACTATAGATGTATTGACTGCAAAGGCAATGGATGAATCATCTGGGGACGAGTCTATTGAAAAGCAAGTATCTGTAGGTCCTCGTTTTCAAGCTGAAATCCCTGAATGGACTGGTGTAGCTTCCGATAGTGACTCTAAATGGCTGGGAACACGAGTATGGTCTTTGAAACATGGCACAGAACCTGCTTCTGAAACAGATATCGGAAGGGGAAGACAAGAGAAGTGTAGCTGCGAACGTCAAGGTTCTGTTGCGTGTGTTAGATTACATATAGCTGAAAATAGGATGAAATTGAAGCTTGAATTAGGCTCTGAATTTTACCATTGGGGATTTGATCGAATGGGTGAAGAAGTTTCACTTCAATGGACAACTATAGAAGAAAAGAGATTTAAGGATATCATGAGATCAAATGTTCCCTCTAAAATAAAATATTTTTGGAACAATGGATTCAAATACTTTCCAAACAAGACAAGAAGACACTTGGTGAGCTATTACTTCAATGTGTTTATCATTCAACTAAGAACCTATCAGAACCGGGTGACCCCAGAGAATATTGATAGCGATGATGAAGTAGAGTTTGGCTATTTGAGCAAAGGTTTTGGAATGGAAGCTATCGAGGGTCTCGGTGATGATGATTTCGTGGAGTGTGCTCTGAGTGAGCAAGCTTCGCAGCAGAAGAGCCGCACAAATAACAAGAGTCAAGCACAGAGAGAAACAATGTCTTCCCCTAGCAAACGCAGAGACATGGACCTGATGAAACTGTCTGTCATCAGGATGATGAGTGACTACAAGGTGGAGATGATCAACGATGACATGCAAGAATTCTTTGTAGAATTCCACGGACCTAAAGATAGTCTGTATGAGGTTGGTGTGTGGAAGGTAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCCATTGGCTTTGTCAATAAAATTTTTCATCCTAATGTTGATGAATTGTCTGGATCTGTATGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTTTGACCTTGTAAATGTGTTTGAGGTGTTTCTTCCTCAGCTTCTTCTGTATCCCAATGCATCAGATCCATTAAATGGTGATGCTGCTGCCTTGATGATCAGAGATCATGCTACATATGAACAAAGAGTCAAAGGTGAATATTGTGAGAAATATGCAAAGCCAGAAGACATTGGAGCTGTAGAAGAGAAAGATTCTAGCGAGGATGAGCTGAGTGAAGATGGTTATGCCTCTAGTGATGATGGCATTGTCGGGCAACCAGATCCTTAG 2631 0.4128 MLHILRFQVSSLILSLAFAFHIIMGCPQQPAKDLITRESKFMEEWSTFSNGPSLDSLGVETAGEFPGNGCCPGDGHVDNGAPHGKLTQKCLFYQLYPLYLKDNCSQAGARPLLVLVDGQQLDLYKLFSLVKERGGCAEVSKNGSWGSVAKGLGLNLEVYSPVKLVYHKYLNDFERWLKKFFEEKILKNGNHGCDWGLEWLPLDIEKEFRGLLCLNPKNKADDELFKSKSNKKKKNTDLVNHKNGNNLLDTKDKNNESEDVQHIEGDNNEKSSNGIKDNHATLGAECADKECNLLKRKRDAFSGMLNWMKNIAKHPLDPLPRPIPKPSKWKECKGRGFFGQFLKAREVLSLRNHEEPNSGLSSLQEVISGFKSAPLEVTLSNKQKIHPAMFEDHVALDRHATGKSRCSERLPSSVKSRSCSCCNPCSHNGNTLAGSHNKVEENCPHEKTTETIDVLTAKAMDESSGDESIEKQVSVGPRFQAEIPEWTGVASDSDSKWLGTRVWSLKHGTEPASETDIGRGRQEKCSCERQGSVACVRLHIAENRMKLKLELGSEFYHWGFDRMGEEVSLQWTTIEEKRFKDIMRSNVPSKIKYFWNNGFKYFPNKTRRHLVSYYFNVFIIQLRTYQNRVTPENIDSDDEVEFGYLSKGFGMEAIEGLGDDDFVECALSEQASQQKSRTNNKSQAQRETMSSPSKRRDMDLMKLSVIRMMSDYKVEMINDDMQEFFVEFHGPKDSLYEVGVWKVRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMIRDHATYEQRVKGEYCEKYAKPEDIGAVEEKDSSEDELSEDGYASSDDGIVGQPDP 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04429 876 CDD ARID 92 174 - -
Vimu11g04429 876 SMART ubc_7 695 841 - -
Vimu11g04429 876 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 765 781 IPR023313 -
Vimu11g04429 876 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 85 695 - -
Vimu11g04429 876 MobiDBLite consensus disorder prediction 844 876 - -
Vimu11g04429 876 MobiDBLite consensus disorder prediction 849 863 - -
Vimu11g04429 876 Pfam Ubiquitin-conjugating enzyme 708 832 IPR000608 -
Vimu11g04429 876 SUPERFAMILY ARID-like 88 179 IPR036431 GO:0003677
Vimu11g04429 876 MobiDBLite consensus disorder prediction 246 273 - -
Vimu11g04429 876 FunFam Ubiquitin-conjugating enzyme 5, E2 689 852 - -
Vimu11g04429 876 Gene3D Ubiquitin Conjugating Enzyme 681 852 IPR016135 -
Vimu11g04429 876 ProSiteProfiles ELM2 domain profile. 471 517 IPR000949 -
Vimu11g04429 876 MobiDBLite consensus disorder prediction 226 275 - -
Vimu11g04429 876 Pfam ARID/BRIGHT DNA binding domain 100 174 IPR001606 GO:0003677
Vimu11g04429 876 SMART ARID_2 83 174 - -
Vimu11g04429 876 MobiDBLite consensus disorder prediction 669 694 - -
Vimu11g04429 876 MobiDBLite consensus disorder prediction 669 689 - -
Vimu11g04429 876 CDD UBCc 695 832 IPR000608 -
Vimu11g04429 876 Gene3D - 81 188 IPR036431 GO:0003677
Vimu11g04429 876 ProSiteProfiles ARID domain profile. 86 178 IPR001606 GO:0003677
Vimu11g04429 876 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vimu11g04429 876 SMART bright_3 87 179 IPR001606 GO:0003677
Vimu11g04429 876 SUPERFAMILY UBC-like 707 835 IPR016135 -
Vimu11g04429 876 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 691 840 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04429 Vimu-Chr11 65392808 65404118 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu11g04429 UQ_con 4.3e-35 CL0208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04429 - - gmx:100819320 951.814