Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04420 ATGCGGTCGTGGTGGGGAAAGTCTTCTTCCAAAGAGGTGAAAAGGAAGGAAAACAAGGAAAGTATTATTCAGAGCATACAGCGGAAATTAAAGAATGCTTCTGAAGAGAAATGCAATAATAAATCTGAAAGATCAAGGAGATACCGTGATGATGCCATCTCCAAAAAGGGATCTAGATCTCTTGCACCTTCAAGATCACCATCACCCTCTACACATGTATCCCGATGTCAAAGTTTTGCAGAAAGGCCTCTCTCTCAACCACTTCCATTACCAGGGTCACATCTTTCGGATGCCATTGGTGCAAATTCTGGGGTTATTTTAACATCAAAACTTGATAGAACCATAAACTCAAAGCCATCTCTATATTTTCCACTTCCAATACCTGGTTTTGTTTCAAACAAGGAAGATGCTACTGATATGGAAAGAGAAATAGCCACTGCATCTGTTTCTAGTGAAAGCTCAATTGATAGTGGCAACTCATTTGATTCACCGCATTTTGTTAGCCCTCTGGCTTCTGATTGTGAAAATAGAAACCGAGCAACCACTAATAGTTCTTTCAGTCTGGTGCACAAGAACCAACCACTTATTAGTATACAAAGAAACTCAAGAACATTCTTAAAACCAAGTCCTCAGTTGTGCAATAATAAGCCATTGTCTACCTCACCAAGAGGGGTTCCATTACATCTAAAAAATCTGCAAGTGGCTCGCCCAGGTGGTTTGTGTAGTGCTCCAGGTAGTTCAATATCAAGTCCTAGAAATCCAACGGGAACATTTGGTCCTGAACAAATGTTGAACTCTGAATTACAGACAAGAAAGCCTTATCCAGATATAGCTTCTGGGCACTCCTATAGTCTTGTTTCGGGCCGTAATTCTAGCCATATTTCAGTTGGTGGGGATCTTTCGGGACAGATGATTTTGCCTCAAAACAGGTGTAGCCCTGAGTGTTCTCCAATAGTTAGTCCCAGAATGACAAGCCCTGGTCCCAGTTCCAGGATACAGAGTGGTACTGTGACCCCTCTGCATCCCAAAGCCGGAGGAATTGCAGCAGAAGCACATACAAGACGCCTTGACGATGTGAAACAAAAAAATCATCAGTTACCACTTCCTCCAATAACAGTTACTAAGCCGTGTCCATTTTCTCCAACCTATTCTGCATCAACAACTCCTTCAGCCCCTCGTAGTCCTGCTGGATCAGAAACTTCGATAAGCCCAGGTTCGCGCTGGAAAAAAGGGCAGTTGCTTGGAAGGGGAACATTTGGACATGTATATCTTGGTTTTAACAGAGAAAGTGGCGAGATGTGTGCGATGAAGGAGGTAACCCTTTTCTCAGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAGAAATTGCAATGCTTAGTCGGTTGCGGCATCCAAATATTGTTCAGTATTATGGATCTGAGACGATCGATGACAGACTTTATGTATACTTGGAGTATGTCTCCGGTGGGTCAATCTATAAGCTGGTTAAGGAATATGGCCAGTTAGGTGAAATTGCAATTCGCAATTATACTCGACAAATTTTGTTAGGACTCGCATATTTACACGCCAAGAACACTGTTCACAGGGACATTAAAGGAGCAAACATATTGGTGGACCCTAATGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATATAAGTGGGCCATCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCGGTTGATATATGGAGTCTGGGATGCACTGTTTTGGAGATGGCGACAACAAAACCTCCTTGGAGCCAATATGAAGGGGTTGCTGCTATGTTTAAGATTGGGAACAGCAAGGAACTTCCGACAATTCCAGATCATCTTTCAGAAGATGGAAAAGATTTTGTAAGGCTTTGTTTGCAAAGGAATCCTCAAAATCGTCCCTCGGCTGCTCAACTTCTAGAGCATTCATTTGTTAAAAATGCTATGCTGGAAAGATCTATTTTATCTGCCGCTCCTTCAGAAGATCCTACTGCTATAATAAATGCAGTGAGATCTCTGGTCGTTGGACCTGCAAAACGTAATTCATGCTTAGACTCAGAAGTAGCCGGGATCAATCCGCCTAGAAACTTGAAAGCGGGTTCTGGATCAAGTGATCCTCATACACCTAGAGAGATCTCTTGTCCCATCTCTCCCTCTTTTCCTTATAAATCACTGCATACAAGTGGAAGGATGTCGCCTCCAATATCTAGCCCTCGTACTGCATCAGGCTCATCTTCGCCCCTGACCAGTGGCGGCGGTGCTATTCCATATCATCAGACAAAACAATCAATAATCTCCCATGAAGTTTCGGGGATGATACAAAAGTCCCATCATGGTGTTATTCCAATATCCAGCCCTCGTACTGCATCTGGCTCATCTTCGCCCCTAACCAGTGGCGGCGGTGCTATTCCATATCATCAAACAAAGCAATCAATACTCTCTCATGAAGTTTCGGGTAGGATCCAAAAGTCCAATTATGGTGTCATTCCAATATCTAGCCCTCGTACTGCGTCTGGCACATCTTCACCACTAACCAGTGGCGGTGGTGCAATTCCATTTCATCAGTCAAAGCAACAACTATTCTCACACGAAGTTGTGGGTATGAGCCAAAAGTCTCAGAATGGTGCCGTTCCAGTTTCTAGCCCTCGTACTGCGTCTAGCTCTTCTTCACAACTAACCAGCGGTGGAGGCGCTGTTCCATTTCATCAGACAAAGCAACCACTATTCTCACACGAAGTTTTGAGTATGATCCAAAAGTCTCAGAATGGTGCTATTCCAATATCTGGCCCTCGTACTGCATCTGGCACATGTTCGCCACTAACTAGCGGTGGAGGCGCTGTTCCATTTCATCAGACCAAGCAACCACTATTCTCACATGAAGTTTCCGGTATGATTCAAAGGTCTCATAATGGTTGTATTCCAATATCTAGCGCAACAACTCCATCTGGCTCATCTTCGCCACTAACCTGTGGGGGAGGAGCTATTCCGTTTCATCAGACAAAGCAGCCACTGTTCTCACATGAAGTTGTGGGTATGACTCAAAAGTCTCAGAATGGTGCCATTCCAATATCTAGCCCTCGTTCTGGCTCATCTTCACCACTGACCAGTGGCGGCGGTGCTATTCCATTTCATCAGACAAAGCCACAACTAATCTCAAATGAACTTGTGGGTATGATCCAAAAGTCTCTGGATGGTGCTATTCCGACAGCTAGCCATCGTACTGCATCTGGCTCATCGCCTCTGACCAGTGGTGGCAGTGCTATTCCATGTCTTCAGACCAGGCAATCACAGATATCGCATGAAGTTGTTGGCATGATCCAAAATCCTCAGCATGGTTTTCATTCATTTGGAAACACCCCTCATCAGGGTTCTAAGCATGCGCAGTTTGGGAGAAACTTGCAAACTACACATGCTTGCCGGGATGTAGGTTCATCTAACAATAACCATTCTAGGAGGGCTGTCCAGGGAGACCCAATAGAATTTCGCGATGGGAAATCATATTTGGCTGATTGCGTGTCACAACAGCTGTTAAGGGATTATGTACGGCTACATGCATGCATTGATCTTAAACCCGATCCCCCAAATCCTGATCACATAAATGGCTTATGA 3666 0.4419 MRSWWGKSSSKEVKRKENKESIIQSIQRKLKNASEEKCNNKSERSRRYRDDAISKKGSRSLAPSRSPSPSTHVSRCQSFAERPLSQPLPLPGSHLSDAIGANSGVILTSKLDRTINSKPSLYFPLPIPGFVSNKEDATDMEREIATASVSSESSIDSGNSFDSPHFVSPLASDCENRNRATTNSSFSLVHKNQPLISIQRNSRTFLKPSPQLCNNKPLSTSPRGVPLHLKNLQVARPGGLCSAPGSSISSPRNPTGTFGPEQMLNSELQTRKPYPDIASGHSYSLVSGRNSSHISVGGDLSGQMILPQNRCSPECSPIVSPRMTSPGPSSRIQSGTVTPLHPKAGGIAAEAHTRRLDDVKQKNHQLPLPPITVTKPCPFSPTYSASTTPSAPRSPAGSETSISPGSRWKKGQLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSRESAQQLGQEIAMLSRLRHPNIVQYYGSETIDDRLYVYLEYVSGGSIYKLVKEYGQLGEIAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGRIKLADFGMAKHISGPSCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSEDGKDFVRLCLQRNPQNRPSAAQLLEHSFVKNAMLERSILSAAPSEDPTAIINAVRSLVVGPAKRNSCLDSEVAGINPPRNLKAGSGSSDPHTPREISCPISPSFPYKSLHTSGRMSPPISSPRTASGSSSPLTSGGGAIPYHQTKQSIISHEVSGMIQKSHHGVIPISSPRTASGSSSPLTSGGGAIPYHQTKQSILSHEVSGRIQKSNYGVIPISSPRTASGTSSPLTSGGGAIPFHQSKQQLFSHEVVGMSQKSQNGAVPVSSPRTASSSSSQLTSGGGAVPFHQTKQPLFSHEVLSMIQKSQNGAIPISGPRTASGTCSPLTSGGGAVPFHQTKQPLFSHEVSGMIQRSHNGCIPISSATTPSGSSSPLTCGGGAIPFHQTKQPLFSHEVVGMTQKSQNGAIPISSPRSGSSSPLTSGGGAIPFHQTKPQLISNELVGMIQKSLDGAIPTASHRTASGSSPLTSGGSAIPCLQTRQSQISHEVVGMIQNPQHGFHSFGNTPHQGSKHAQFGRNLQTTHACRDVGSSNNNHSRRAVQGDPIEFRDGKSYLADCVSQQLLRDYVRLHACIDLKPDPPNPDHINGL 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 705 775 - -
Vimu11g04420 1221 Coils Coil 16 36 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 59 78 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 320 340 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 26 56 - -
Vimu11g04420 1221 Gene3D Transferase(Phosphotransferase) domain 1 406 688 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 887 919 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 849 871 - -
Vimu11g04420 1221 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Vimu11g04420 1221 FunFam Mitogen-activated protein kinase kinase kinase 406 688 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 887 921 - -
Vimu11g04420 1221 SMART serkin_6 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04420 1221 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 28 674 - -
Vimu11g04420 1221 SUPERFAMILY Protein kinase-like (PK-like) 406 665 IPR011009 -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 320 337 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 1037 1063 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 1037 1058 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 26 78 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 800 823 - -
Vimu11g04420 1221 CDD STKc_MEKK1_plant 407 664 - -
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 739 775 - -
Vimu11g04420 1221 ProSiteProfiles Protein kinase domain profile. 408 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 366 409 - -
Vimu11g04420 1221 Pfam Protein kinase domain 409 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04420 1221 MobiDBLite consensus disorder prediction 377 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04420 Vimu-Chr11 65300417 65306944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04420 4 787 MAP Kinase Kinase Kinase AT1G63700 61.702 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu11g04420 Pkinase 1.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04420 K20717 - gmx:100814422 1481.46