Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04413 ATGGTGCCAGAGAACATGAAGAAGCAGCTTGCTTTGTCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCCGGGGTGTTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTACAGAAATCACCCCACAAAGCAAACGGCCTTCGGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTGGCAAAGGGTCAATCCATTTGGCTCAACAATGCGCATTCCGCTGACTGTAAAGTTTTTAGTCGTTCTCTGCTCGCAAAGACGGTCGTGTGTTTTCCGGTTATGGAAGGAGTTATTGAGCTAGGTACCACTGAACATGTCTCAGAAGATTTCAGTCTAATTGAGCGGATCAAGACTTCTTTCTTGAATAATTTTCATGTCAACGATCCTATTAAGTCAGGAACTACATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATAATAATGTTGAATCAATTCCAGAAATTGGGTATGAAATAGCCAGCAAAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACAACTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAGATAAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATATCACAAACTTTTGCCAGTCCTGAGAATATTCCTTCTGCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTGGATCCTCGAGGTGATGATTGGCATTATCAGAGAGTTCTGTCTGACCTTTTAAAAACCTCTGATCAGTTACTCATGAAAATGCATTCACAAAAGTTTCATCAGGAATCAAGCTTTGTCTGTTGGAGGCCAGAAAGGGCAAAGGATTGCCAATGGTCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACATGGATGGTCTGCATGAGTCTCAAGAAGAAAATGACTATAAGGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTAATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCGATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGTTCAAAGAGGGATAGCAAATATGGAGCCGGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGAACTTCTGATCATTATTTTAGCAAAAACAACAACGGAAAGAAATCAGTTGTAAAAAAGAGAAAGGTCTGTGGCGTTGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTGAAAGGAAGTTATGCTAATGATATTACTGTGAGAACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCTCAAGATCAGGAAGGCTACTAGAAATTATGGAAGCAGTTAATAGTCTCAGTATAGATTTTAATTCGGTTCAGTCAACAGAGGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGCTAACAGGAGCAACCATTGCTACAACCAAAAGAATCAAACAAGCACTTCAAAAAGTGGCTTCGAAGTTCTGA 1866 0.4094 MVPENMKKQLALSVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTTEITPQSKRPSAALSPEDLTDAEWYYLVCMSFVFNIGQGLPGRALAKGQSIWLNNAHSADCKVFSRSLLAKTVVCFPVMEGVIELGTTEHVSEDFSLIERIKTSFLNNFHVNDPIKSGTTLKSRNQEDLAYVAFDNNVESIPEIGYEIASKTSPDGSSNAFQANQQLDETFMVERITSGTSQVQSWQVMDDEISNCVHNSMNSSDCISQTFASPENIPSAPKCNNPSDPFARDIQKCNNPKMTLVDPRGDDWHYQRVLSDLLKTSDQLLMKMHSQKFHQESSFVCWRPERAKDCQWSRSGTSQKLLKKVLFEVPQMHMDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEVQRGIANMEPGTRRSPQDMVERTSDHYFSKNNNGKKSVVKKRKVCGVDETGKEINSDALKGSYANDITVRTSDNEIVIEMKCPSRSGRLLEIMEAVNSLSIDFNSVQSTEADGNLYLTIKSVLTGATIATTKRIKQALQKVASKF 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04413 621 Gene3D - 417 483 IPR036638 GO:0046983
Vimu11g04413 621 Coils Coil 458 485 - -
Vimu11g04413 621 Pfam Helix-loop-helix DNA-binding domain 423 469 IPR011598 GO:0046983
Vimu11g04413 621 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 184 IPR025610 -
Vimu11g04413 621 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 421 486 IPR036638 GO:0046983
Vimu11g04413 621 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 419 468 IPR011598 GO:0046983
Vimu11g04413 621 PANTHER TRANSCRIPTION FACTOR TT8 2 619 - -
Vimu11g04413 621 SMART finulus 425 474 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04413 Vimu-Chr11 65263837 65267004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04413 2 618 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.884 8.83e-174 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g04413 bHLH-MYC_N 6.4e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04413 - - gmx:100808167 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04413 11 65263837 65267004 Vimu11g04413 11 65263837 65267004 ECH