Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04404 ATGAGAACTAGCAACCAAAGTCCTTTCACTTTCCCTGTCTTTCATAGTTTTGACTGTTTGGAATCCCTGCGCTTGCTGAGTTTCTGTCCTTTTTTCACTGTTAACTGTTATTGGGTTCTCCCAACCGAGCTAAGCATGGTCCCAGTTGAAGATGGTGTTAGGGTTGGGATGGGTTGTGACTTTTCTAAGTACACATCATGCTGCATGGATACACAGGAGGATGGTCATCCAGCTCCTGAGGATCAGGTTGACGGTGAAAACGAAGACAATGCTGTTGAGGGCATTGAGTTGCCACGGTTTCATGAATTCACCATTGATCAGCTTAGGAGGGCTACATCAGGATTTGCTGTTGAAAATATTGTTTCTGAGCATGGAGAAAAAGCTCCAAATGTGGTCTATAAAGGGAGACTTGATAATCAAATGCGAATTGCAGTCAAACGGTTCAACAGAAATGCTTGGCCTGAAGCGCAGCCATTTTTGGAGGAGGCCAGGGCTGTTGGTCAGCTGAGGAACCAACGACTGGTAAATCTGCTTGGATGTTGCTGTGAAGGTGACGAGAGGTTACTCGTTGCAGAGTATATGCCCAATGATACTTTGGCAAAACATTTATTCCATTGGGAAAATCAGCCCATGCGATGGGCAATGCGAATGAGAGTTGCATTATTCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTAAATGCCTACAGAGTGCTTTATGATGATGACTACAATCCTAGACTTTCATGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTATAGTACGAATTTGGCATTTACTCCACCTGAATATCTCAGGACAGGCAGAGTCACTCCAGAGAGTGTAACTTACAGCTTCGGCACACTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCCCTTGACCTAATTAGAGACAAGAACCTTCAGACGCTATCAGACTCTTGCTTAGAAGGGGAGCTTACAAATGATGATGGGATTGAATTAGTGCGTCTGGCCTCACTATGTTTGCAATCTGAACCACGAGAGCGTCCAAATCCAAAGTCCCTGGTTGCTGCTCTAATACCTCTACAGAAGGATTCTGAGGCTCCTTCTCATGTACTGATGGGTATACCAGATGGTGCAACTACTTTTCCCCTTACACCTCTAGGAGAAGCTTGTCTACGAATGGATCTTACTGCCCTGCATGAGGTGATGGAGAAAATGGGGTATAAAGACGATGAGGGTGCAGCAACTGAGCTTTCATTCCAAATGTGGACGAACCAGATGCAGGAAACGTTGGACTCAAAGAAGAAAGGGGATGCTGCTTTTCGGCTTAAGGATTTTAAAACGGCAATTGATGGCTATACGCAGTTCATTGATGTTGGAACAATGGTTTCTCCAACGGTTTATGCACGTCGTGGTTTATGTTATCTTATGAGCAACATGGCTGATGAAGCACTTAATGATGCAATGCAAGCCCAAGTAATATCACCCGTTTGGTATATCGCGTTTTATTTACAAGCTGTTGCACTTTTAGCAATGGGCAAGGAGAATGATGCCCAAATGGCACTTAAAGAAGGTTCCTTGCTTGAAAGTAAAAGGAGCACAAATTAA 1641 0.4394 MRTSNQSPFTFPVFHSFDCLESLRLLSFCPFFTVNCYWVLPTELSMVPVEDGVRVGMGCDFSKYTSCCMDTQEDGHPAPEDQVDGENEDNAVEGIELPRFHEFTIDQLRRATSGFAVENIVSEHGEKAPNVVYKGRLDNQMRIAVKRFNRNAWPEAQPFLEEARAVGQLRNQRLVNLLGCCCEGDERLLVAEYMPNDTLAKHLFHWENQPMRWAMRMRVALFLAQALEYCTSKGRALYHDLNAYRVLYDDDYNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDKNLQTLSDSCLEGELTNDDGIELVRLASLCLQSEPRERPNPKSLVAALIPLQKDSEAPSHVLMGIPDGATTFPLTPLGEACLRMDLTALHEVMEKMGYKDDEGAATELSFQMWTNQMQETLDSKKKGDAAFRLKDFKTAIDGYTQFIDVGTMVSPTVYARRGLCYLMSNMADEALNDAMQAQVISPVWYIAFYLQAVALLAMGKENDAQMALKEGSLLESKRSTN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04404 546 Gene3D Phosphorylase Kinase; domain 1 90 193 - -
Vimu11g04404 546 SUPERFAMILY TPR-like 445 536 IPR011990 GO:0005515
Vimu11g04404 546 FunFam probable serine/threonine-protein kinase At4g35230 439 546 - -
Vimu11g04404 546 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 67 544 IPR045845 GO:0004672|GO:0009742
Vimu11g04404 546 Pfam Protein tyrosine and serine/threonine kinase 131 368 IPR001245 GO:0004672|GO:0006468
Vimu11g04404 546 FunFam probable serine/threonine-protein kinase At5g41260 195 386 - -
Vimu11g04404 546 ProSiteProfiles Protein kinase domain profile. 118 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04404 546 SUPERFAMILY Protein kinase-like (PK-like) 95 377 IPR011009 -
Vimu11g04404 546 Gene3D Tetratricopeptide repeat domain 428 540 IPR011990 GO:0005515
Vimu11g04404 546 Gene3D Transferase(Phosphotransferase) domain 1 195 386 - -
Vimu11g04404 546 FunFam probable serine/threonine-protein kinase At4g35230 90 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04404 Vimu-Chr11 65172143 65182983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04404 76 394 Glycoside Hydrolase AT3G07070 32.571 2.90e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vimu11g04404 PK_Tyr_Ser-Thr 8.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04404 K14500 - gmx:100819210 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04404 11 65172143 65182983 Vimu11g04404 11 65172143 65182983 ECH