Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04403 ATGACATTGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACTGGTGGCATTAGTGTTTCACTTTCTAGTCCTGATGGTCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCAGTGCAGGTGGTATTGTGCAGTTTTGTGTATGGTGGCTCAAAGACCAAGCCTAAACAAGGGCTCACTATCACAAATGAAAGTGGTGAGCACCCTCAGCATAATGACAAGATGGCTACTCCAGCCAGAGCTCCACCTGCTCATAATCAAAACTACCTCCCTTCTGGCGCACACATTTGGCCTGGATCTCAACCGGCAGAGCTGAAAAACACACAAACCCACACTGGCATTGACTTGACTCGTGGCTGA 408 0.4779 MTLGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVVLCSFVYGGSKTKPKQGLTITNESGEHPQHNDKMATPARAPPAHNQNYLPSGAHIWPGSQPAELKNTQTHTGIDLTRG 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04403 135 MobiDBLite consensus disorder prediction 70 135 - -
Vimu11g04403 135 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 63 IPR005175 -
Vimu11g04403 135 SUPERFAMILY AF0104/ALDC/Ptd012-like 4 70 - -
Vimu11g04403 135 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 99 IPR039605 GO:0003680
Vimu11g04403 135 MobiDBLite consensus disorder prediction 118 135 - -
Vimu11g04403 135 Gene3D - 2 84 - -
Vimu11g04403 135 CDD DUF296 4 62 IPR005175 -
Vimu11g04403 135 ProSiteProfiles PPC domain profile profile. 1 84 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04403 Vimu-Chr11 65164324 65167601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04403 4 135 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.260 2.00e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04403 - - gmx:100813888 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04403 11 65164324 65167601 Vimu11g04403 11 65164324 65167601 ECH
Vimu7g02453 7 21009700 21013108 Vimu11g04403 11 65164324 65167601 PCT