Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04397 ATGGGAAGTAAATTTTTAGCGTTAGCTTGCTTGCGGAAGAATGAGGGTTCGGGTAACCTTTCGCCTCGTTCTCACTATCCATCGATGCCGAGATATCCGAAAGGTGTGACGGAAGAAGAAGGAAGCAACAGCGTTTTGCTGAAAGAGGTTTTCTCAGTCACCGGAATGACTTGTTCCGCCTGCGCTGCTTCCGTCGAGAAAGCCGTCAAACGTCTTCCCGGAATTCGCCAAGCTGTCGTCGATCTTCTCAACAATCGTGCACAAGTCCTCTTCTATCCATCCTTTGTCAATGAAGAGAGCATTCGCGAGGCCATTGAAGATGCTGGATTCCAAGCCGCATTAGTCAGAGAAGATAACGAGACATCTATTCAGATTTGCCGCATACGTATCCAAGGCATGACATGCACGTCGTGTTCCTCCACTGTGGAATCTGCACTTCAAGCAATCCAAGGAGTGGTGAAAGCTCGAGTGGCCCTTGCAACTGAGGAAGCTGAAGTTCACTACACTCCAAACGTTGTCACCTACAACCAAATCTTGGAAGGAGTAGAAAACACTGGTTTTCAAGCCACGCTTATCAGCACGGGTGAAGACATGAGCAGAATAGACCTTCAGGTTGAGGGAGTAAGGACGGGCCGTTCCATGAGAATAATTGAAAGTTCTCTTCAAGCACTTCCTGGGGTCGAAGATGTAGAAACACACCCTTTGTTGAACAAAGTGTCTCTTTCTTATAAACCAGACTTGACAGGACCAAGAAATTTCATTAACGTGATTCAGGAAACCGGGTCTAGGCGTTTCAAGGCAAAGATTTTCCCGGGAGAAGGAGGGAAAAGGAATAGTCATAGGAGGGAGGAAATCAAGCAATACTATAGATCCTTCTTGTGGAGTTTGGTGTTTACTATTCCTGTGTTTCTAACTTCCATGGTGTTTATGTATATCCCTGGAATCAAGCATGGACTAGATGCCAAAGTTGTTAAAATGCTCACAGTGGGGGAGATCATAAGATGGGTGCTTTCTACACCAGTGCAGTTTGTTATAGGGAGGAGATTTTACTCTGGTGCTTACAAAGCATTACGCCTTGGCTCTCCCAACATGGATGTTTTGATTGCCCTGGGGACAAATACAGCGTACTTTTACTCAGTGTATTCTGTGCTGAGAGCTGCTACATCTGATGGTTTCAAGGGTACTGATTTCTTTGAGACCAGTGCTATGCTTATTTCGTTTATTTTGCTAGGGAAGTACCTTGAGGTTTTGGCCAAGGGGAAGACATCCGATGCAATTGCCAAGCTCATGAACTTGACACCTGACACTGCTATATTGTTGACGTTGGATAGTGAAGGAAATGTTGTTGGTGAGGAGGAAATTGACAGTAGGTTGATTCAGAAGAATGATGTTATTAAGATCATTCCCGGTGCAAAAGTGGCTTCCGATGGATTGGTCATTTGGGGTCAGAGCCACGTGAATGAGAGCATGATAACAGGTGAGGCACGTCCTGTGGCAAAGAGGAAAGGGGATACTGTTATTGGAGGAACTGTGAATGAAAATGGAGTGTTGCACATTAAGGCTACATGGGTGGGATCAGAGAGTGCCCTTGCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCTAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCCAAATACTTTGTGCCCATGGTTATTTTAATGTCATTTTCAACTTGGCTTGCCTGGTTTATAGCTGGAAAAATTCGTGCTTACCCCAAGTCCTGGATACCATCTTCCATGGATAGCTTTCAGCTTGCTTTGCAGTTCGGGATTTCTGTCATGGTCATAGCCTGTCCATGTGCTTTAGGTTTAGCAACACCGACTGCAGTCATGGTTGGCACTGGAGTAGGTGCATCTCAGGGAATACTTATCAAAGGAGGTCAAGCATTAGAAAATGCACATAAGGTGAACTGCGTTGTATTTGACAAGACAGGTACTCTCACTATCGGGAAGCCTGTGGTAGTAAATACAAAGTTGTTTACAAATATGGTACTCCGAGAATTCTATGAACTTGTGGCAGCAGCTGAGGTGAATAGTGAGCATCCACTGGCGAAGGCTGTTGTAGAGTATGCTAAAAGACTGAGAGATGAAGAGAACCCCATTTGGCCAGAGGTACGGGATTTTGTGTCGATTGCTGGACATGGAGTTAAGGCCATGGTTAGAAATAAGGAAATACTTGTGGGTAACAAGACCTTGATGGTGGACCACAATGTTGCACTTCCTGTTGATGCTGAAGAGATACTGGCAGAAGCGGAAGCAATGGCTCAAACTGGAATTATAGTGTCTATAAACAGGGAAGTTGTTGGGGTTTTAGCAGTATCTGATCCATTGAAACCAGCTGCACAAGAAGTCATTTCCATTCTCAAGTCCATGAAAGTCAGGAGCATCATGGTCACAGGGGACAATTGGGGAACTGCCAATTCTATAGCAAAGGAAGTTGGAATTGAAACTGTTATTGCTGAAGCTAAACCTGAGCAGAAGGCTGAGCAAGTGAAGGACTTGCAGGCTTCTGGGCACAAGGTGGCTATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGGATGGCAATTGGTGCTGGTACAGACATTGCTATTGAAGCTGCTGATATTGTCCTGATGAAGAGCAATTTGGAGGATGTTATAACTGCCATTGATCTTTCCAGAAAAACGTTTTCTCGTATCCGTCTCAACTACATATGGGCTTTGGGCTATAATCTGCTTGGAATTCCAATTGCTGCTGGAGCTCTTTTTCCCTCTACACGATTTCGGTTGCCTCCGTGGGTTGCCGGGGCTGCCATGGCTGCATCTTCTGTCAGTGTAGTTTGCTGTTCTTTACTGTTGAAGTATTATAGGAGACCCAAGAAGTTGAACAATCTTGAGATACGGGGCATAAGCATTGAGTGA 2955 0.4528 MGSKFLALACLRKNEGSGNLSPRSHYPSMPRYPKGVTEEEGSNSVLLKEVFSVTGMTCSACAASVEKAVKRLPGIRQAVVDLLNNRAQVLFYPSFVNEESIREAIEDAGFQAALVREDNETSIQICRIRIQGMTCTSCSSTVESALQAIQGVVKARVALATEEAEVHYTPNVVTYNQILEGVENTGFQATLISTGEDMSRIDLQVEGVRTGRSMRIIESSLQALPGVEDVETHPLLNKVSLSYKPDLTGPRNFINVIQETGSRRFKAKIFPGEGGKRNSHRREEIKQYYRSFLWSLVFTIPVFLTSMVFMYIPGIKHGLDAKVVKMLTVGEIIRWVLSTPVQFVIGRRFYSGAYKALRLGSPNMDVLIALGTNTAYFYSVYSVLRAATSDGFKGTDFFETSAMLISFILLGKYLEVLAKGKTSDAIAKLMNLTPDTAILLTLDSEGNVVGEEEIDSRLIQKNDVIKIIPGAKVASDGLVIWGQSHVNESMITGEARPVAKRKGDTVIGGTVNENGVLHIKATWVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPMVILMSFSTWLAWFIAGKIRAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGILIKGGQALENAHKVNCVVFDKTGTLTIGKPVVVNTKLFTNMVLREFYELVAAAEVNSEHPLAKAVVEYAKRLRDEENPIWPEVRDFVSIAGHGVKAMVRNKEILVGNKTLMVDHNVALPVDAEEILAEAEAMAQTGIIVSINREVVGVLAVSDPLKPAAQEVISILKSMKVRSIMVTGDNWGTANSIAKEVGIETVIAEAKPEQKAEQVKDLQASGHKVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTRFRLPPWVAGAAMAASSVSVVCCSLLLKYYRRPKKLNNLEIRGISIE 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04397 984 NCBIfam HAD-IC family P-type ATPase 404 936 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g04397 984 FunFam Copper-transporting ATPase HMA5 123 194 - -
Vimu11g04397 984 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Vimu11g04397 984 SUPERFAMILY HMA, heavy metal-associated domain 48 118 IPR036163 GO:0046872
Vimu11g04397 984 Gene3D - 419 541 - -
Vimu11g04397 984 Pfam Heavy-metal-associated domain 128 187 IPR006121 GO:0046872
Vimu11g04397 984 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Vimu11g04397 984 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 980 - -
Vimu11g04397 984 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Vimu11g04397 984 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
Vimu11g04397 984 PRINTS Copper-transporting ATPase 1 signature 148 169 - -
Vimu11g04397 984 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Vimu11g04397 984 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Vimu11g04397 984 SUPERFAMILY HAD-like 650 961 IPR036412 -
Vimu11g04397 984 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Vimu11g04397 984 FunFam Probable copper-transporting ATPase HMA5 758 912 - -
Vimu11g04397 984 Gene3D - 658 735 IPR023299 GO:0000166
Vimu11g04397 984 Gene3D - 736 786 IPR023299 GO:0000166
Vimu11g04397 984 FunFam Copper-transporting ATPase HMA5 47 117 - -
Vimu11g04397 984 ProSiteProfiles Heavy-metal-associated domain profile. 199 265 IPR006121 GO:0046872
Vimu11g04397 984 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Vimu11g04397 984 NCBIfam copper ion binding protein 128 189 IPR006122 GO:0005507
Vimu11g04397 984 NCBIfam copper ion binding protein 49 112 IPR006122 GO:0005507
Vimu11g04397 984 CDD P-type_ATPase_Cu-like 290 965 - -
Vimu11g04397 984 Gene3D - 618 912 IPR023214 -
Vimu11g04397 984 SFLD Haloacid Dehalogenase 633 907 - -
Vimu11g04397 984 SUPERFAMILY Calcium ATPase, transmembrane domain M 393 930 IPR023298 -
Vimu11g04397 984 CDD HMA 50 113 IPR006121 GO:0046872
Vimu11g04397 984 Pfam E1-E2 ATPase 450 629 - -
Vimu11g04397 984 CDD HMA 128 190 IPR006121 GO:0046872
Vimu11g04397 984 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Vimu11g04397 984 Pfam haloacid dehalogenase-like hydrolase 647 869 - -
Vimu11g04397 984 SFLD p-type atpase 633 907 IPR044492 -
Vimu11g04397 984 NCBIfam heavy metal translocating P-type ATPase 364 964 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vimu11g04397 984 Gene3D - 47 115 - -
Vimu11g04397 984 MobiDBLite consensus disorder prediction 17 37 - -
Vimu11g04397 984 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Vimu11g04397 984 SUPERFAMILY HMA, heavy metal-associated domain 122 195 IPR036163 GO:0046872
Vimu11g04397 984 Gene3D - 124 196 - -
Vimu11g04397 984 SUPERFAMILY HMA, heavy metal-associated domain 194 262 IPR036163 GO:0046872
Vimu11g04397 984 Gene3D - 199 261 - -
Vimu11g04397 984 ProSiteProfiles Heavy-metal-associated domain profile. 124 190 IPR006121 GO:0046872
Vimu11g04397 984 PRINTS P-type cation-transporting ATPase superfamily signature 802 812 - -
Vimu11g04397 984 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Vimu11g04397 984 PRINTS P-type cation-transporting ATPase superfamily signature 855 874 - -
Vimu11g04397 984 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Vimu11g04397 984 PRINTS P-type cation-transporting ATPase superfamily signature 780 791 - -
Vimu11g04397 984 PRINTS P-type cation-transporting ATPase superfamily signature 878 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04397 Vimu-Chr11 65140944 65149585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04397 1 984 Primary Pumps ATPases AT1G63440 75.227 0.0 1524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04397 K17686 - gmx:100810141 1771.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04397 11 65140944 65149585 Vimu11g04397 11 65140944 65149585 ECH
Vimu7g02459 7 21043704 21047895 Vimu11g04397 11 65140944 65149585 PCT