Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04389 ATGAAGTTGTGTACTTTACTGTTGTTGATTGGTTTGGTTTCCGTGCTCTCTTTTGTGGCTTCTGTCGGGTTGCCTTCAAATAACGAAGTTTTGGCACTTAGAAGATTCAAAGAAGCTGTTTATGAAGATCCACATAAGGCTTTGTCCAACTGGAATACTCTGGAGTCAGATCCCTGTGACTGGAATGGTGTTTCTTGCACTGCAACGCGAGATCATGTCATCAAGCTTAATATATCAGGGGCTTCGTTGAAGGGCTTTCTTGCTCCAGAATTTGGGAAAATCACATACATACAAGAACTGATCTTACATGGCAACAATCTCATTGGAATAATACCTAAAGAACTGGGCATGCTGAAATCTCTTAAGGTGTTGGATTTGGGAATGAATCAGTTGTCTGGACCAATTCCTCCGGAGATTGGAAATTCGACCCAACTTATGAAAATAAACCTGCAGTCCAATGGTTTGACTGGTAGGCTACCTCCGGAACTAGGAAATTTGAAATACCTTCAAGAACTTCGACTGGACAGGAATAAGCTTCAAGGATCTCTTCCTGGTGGTAGCAGTTCAAATTTTTCTTCAAATATGCATGGGAAGTATGCCTCTGGTGTGAATTTAACTGCCTTCTGTCGTTCATCTCAGTTAAAAGTAGCAGATTTTTCATATAACTTTTTCGTTGGCAGCATACCCAAATGCTTGAAGTATCTTCCGAGATCAAGCTTTCAAGGAAATTGTTTCCATATCAAAGACATAAAACAGAGGACTTTGGTGCAATGCGGTGCTTCACCTGCCCAAAGTAGTCCAGTAGTGAACCCAAAGTCCGAGTCTGCTACCAAACATGTAAAAACCAAGCATCAAGAAACATCAAAACCTGCCTGGCTTTTGGCTCTAGAAATAGTGACGGGAACTATGGTTGGTTCTCTCTTTGTTATTGGTATTCTCACTGCAATTCAAAGGTGTAACAACAAATCATCTATCATTATACCTTGGAAAAAATCTGGAAGCGGAAAAGATTATCTGGCAATACAAATAGACTCGGAGATGTTAAAGGATGTCACGAGGTATAGCAGACAGGATCTTGAAGTGGCCTGTGAAGACTTTAGCAACATAATTGGGTCCTCACCAGATAGCGTGGTGTACAAGGGTACGATGAAAGGTGGACCTGAGATTGCTGTAATTTCCCTCTGCATAAAGGAAGAAAATTGGACGGGATACCTTGAGCTTTATTTTCAAAGAGAGGTGGCAGACTTGGCAAGGTTAGATCATGATAACGCAGGAAAACTGCTAGGATATTGTAGAGAGAGCAGTCCATTTACAAGGATGCTGGTTTTTGAATATGCATCAAACGGAACACTTTATGATCACCTACATTGTTATGGAGAAGGATGCCAGTTGTCATGGACACGGCGTATGAAAATTATCATTGGCATTGCACGTGGACTCAAGTATTTGCACAATGAAATCGAGCCAGCATTCACCATCTCAGAGTTGAATTCCAATGCTGTTTACCTTACAGAAGATTTTTCCCCTAAGCTGGTGGATTTTGAAAGTTGGAAGACCGTTCTTGAAAGATCAGAAAAAAATTCTGGTTCAGTTAGTAGCCAAGGAGCTGTTTGTGTTCTACCAAACTCCCTTGAAGCACGCCATGTTGACCCCAAAGGAAACATATATGCTTTTGGTGTACTTCTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGTACAAAGGGTACTTGGTGGATTGGGCCAGGGACTATCTTGAAATGCCAGAAGTAATGTCATATGTGGTGGCTCCTGAGTTGAAGCATTTTAGATATGAAGACCTCAAAGCAATATGTGAGGTGATAACTCTTTGCATCAGTCCTGATCCTTCTGTACGTCCATCAATGCGTGAATTATGCATTATGTTGGAGAGCAGAATAGACACATCGATTAATGTGGAGCTAAAGGCATCATCTCTGGCTTGGGCTGAGCTAGCCCTTTCATCATAA 1992 0.4152 MKLCTLLLLIGLVSVLSFVASVGLPSNNEVLALRRFKEAVYEDPHKALSNWNTLESDPCDWNGVSCTATRDHVIKLNISGASLKGFLAPEFGKITYIQELILHGNNLIGIIPKELGMLKSLKVLDLGMNQLSGPIPPEIGNSTQLMKINLQSNGLTGRLPPELGNLKYLQELRLDRNKLQGSLPGGSSSNFSSNMHGKYASGVNLTAFCRSSQLKVADFSYNFFVGSIPKCLKYLPRSSFQGNCFHIKDIKQRTLVQCGASPAQSSPVVNPKSESATKHVKTKHQETSKPAWLLALEIVTGTMVGSLFVIGILTAIQRCNNKSSIIIPWKKSGSGKDYLAIQIDSEMLKDVTRYSRQDLEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGYLELYFQREVADLARLDHDNAGKLLGYCRESSPFTRMLVFEYASNGTLYDHLHCYGEGCQLSWTRRMKIIIGIARGLKYLHNEIEPAFTISELNSNAVYLTEDFSPKLVDFESWKTVLERSEKNSGSVSSQGAVCVLPNSLEARHVDPKGNIYAFGVLLLEIISGRPPYCKYKGYLVDWARDYLEMPEVMSYVVAPELKHFRYEDLKAICEVITLCISPDPSVRPSMRELCIMLESRIDTSINVELKASSLAWAELALSS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04389 663 Gene3D Phosphorylase Kinase; domain 1 340 445 - -
Vimu11g04389 663 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vimu11g04389 663 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Vimu11g04389 663 SUPERFAMILY L domain-like 27 236 - -
Vimu11g04389 663 Pfam Protein tyrosine and serine/threonine kinase 368 634 IPR001245 GO:0004672|GO:0006468
Vimu11g04389 663 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 189 - -
Vimu11g04389 663 Gene3D Ribonuclease Inhibitor 141 263 IPR032675 -
Vimu11g04389 663 PANTHER PROTEIN MALE DISCOVERER 2 21 661 - -
Vimu11g04389 663 ProSiteProfiles Protein kinase domain profile. 364 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04389 663 Gene3D Transferase(Phosphotransferase) domain 1 446 653 - -
Vimu11g04389 663 SUPERFAMILY Protein kinase-like (PK-like) 344 638 IPR011009 -
Vimu11g04389 663 FunFam Inactive receptor-like serine/threonine-protein kinase 338 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04389 Vimu-Chr11 65109186 65112568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04389 3 638 Receptor kinase-like Gene Family AT2G01210 26.584 2.07e-55 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu11g04389 PK_Tyr_Ser-Thr 7.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04389 - - gmx:100781978 1133.63