Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04381 ATGGACGGAACTTCGTCTTCTGTAATTGACTTCCCTGATATTCCACTAAATCTTAATGTCCTTGTCATTGATACTGACCCTGAAGATCTTGAATTCATCAAGAAATCATGCGAAGAGAATATTCGTTGTAAAGATATTTCTCATCAAGCTGTAATATGTTCTGAATCTTCAATGGCTGTTGAGGTTTTGCTGAAAAAAGAAATAGACATTCATTTGATCGTCATGGAGCTTCATATGCCAATGATGAATGGCTATGAATTCATGCAATTTCTCTATGAAGAAGGATTTGATATTCCTTTTGTCATGATGTCGTCTAAGTCTGATGGTATTCCTTTTTCTTCCATGGAAATGGCTTTCAAACTTGGGGCTATCGAGTATTTCTTTAAACCCTTCCGTGGTCGTGATCAACTGCTAGATTTGTGGTCACCTTTCTTAAAGCATTATATCGCCAGGCGGAAAGAAGATGAAGAGACAAGTGATGGAGAAGCCAAAGCAGATGACACCCTCCACGAGAAAGATGACACCCTCCACGAGAAAGATGACACACCCTAG 552 0.3931 MDGTSSSVIDFPDIPLNLNVLVIDTDPEDLEFIKKSCEENIRCKDISHQAVICSESSMAVEVLLKKEIDIHLIVMELHMPMMNGYEFMQFLYEEGFDIPFVMMSSKSDGIPFSSMEMAFKLGAIEYFFKPFRGRDQLLDLWSPFLKHYIARRKEDEETSDGEAKADDTLHEKDDTLHEKDDTP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04381 183 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 156 IPR045279 GO:0009736
Vimu11g04381 183 Pfam Response regulator receiver domain 20 137 IPR001789 GO:0000160
Vimu11g04381 183 MobiDBLite consensus disorder prediction 153 183 - -
Vimu11g04381 183 SUPERFAMILY CheY-like 18 154 IPR011006 -
Vimu11g04381 183 Gene3D - 17 156 - -
Vimu11g04381 183 ProSiteProfiles Response regulatory domain profile. 19 144 IPR001789 GO:0000160
Vimu11g04381 183 SMART REC_2 18 141 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04381 Vimu-Chr11 65055402 65056152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04381 3 181 Response Regulator Gene Family AT4G16110 25.137 5.62e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g04381 Response_reg 2.1e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04381 - K02483 vra:106769483 347.436