Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04377 ATGGAAGAAACTGGGAAGCAACGTGGAAAAGAAGTGAACGAAGGTACCTCAAACACTGTTAAAGAACGTTCCATTTCTCCACTTGATCTAGGTTTGTTCGACATATGGAATCGATTTCGTAGTTTCTTAGTGATTTTGTCCAAAAAGGTCAAAAAGAAAGGTGAGTTCTACGGTGGCAAGATCCAGCCCCGAACCCATGACAACCAACTCTCCTACGTCGGCGGTGACACCAAGATCCTCGCCGCCGACCGCTCCATCAAGTTCCCCGTTTTCCTTTCCAAGCTCGCGGCTCTCTGCGACACCACGCCGCAGGACCTCGCCTTCAAGTACCAACTCCCTGGCGAAGACCTCGACCCCCTAATCTCCGTCACCAACGACGACGACCTAGAACACATGATGCACGAGTACGACCGTCTCTATCGCCCTAACTCCAAACCTGTTAGGATGAGACTCTTTCTCTTCACGCTTTCCTTAAACCATAATTCCTCGTTCTCCTCAGATCGTGATCGCTTCGTTGATGCTCTTAACTCTACTCCAATTCCTCCACAACCTGACTCCATCAAAACTCCTCTTATTATTCCTTCCAATGTCGATTACCTCTTCGATCTCGACAAGGTCGTTGCTCCTCTCACTCTCCCTCCCTCCTTCGCGGCCGTCAAGTTCCACAATCCAGCACCCGAGCCAATTGCGCCGCAGCCGAAGTGTCAGGTTCGTGATGGAATCTCCATTTCTGATCACGTCGCTGGATCGGATCCGAGTGCAAACTCGATCTTGATTCAGAGACAAATACAGCAGGAGATGCAGCGTTTGCAGATTGCTGAGAATGAATATCGGAGGAGGAGTGAGGATGGTTTCGCTGGTGGCTATGCCGCTGCAGGAGGTGATTATTACATGCAGAAGATGTCGGGGAAGGTTCGGCCTGCTAATGTGCCCCATCCTAGTGGGTACTGGCAGGAGAAACAGTTTTCTGACAAGGGTTTTCAGACGATAGTCATGACGACTCCCGGAGTCCCCCCTGTTACTAGATCGGATACAAAGGATTCAATTGACAGAGATGCTGTGCTTGCAAGGGTTGAATCAGAGAAAAGAGTAGCTTTAATCAAAGCCTGGGAAGAAAGTGAAAAAACAAAAGCAGAAAACAGAGCATATAAAAGGCACAATGCTGTTGTGTTGTGGGAGAACAGTAAGAAAGCATCAGCAGAGGCACATCTGAAGAGAATTGAGGAAAAATTGGACAGAAACAAGGCGAAGTGTGTGGAGAAGATGCAAAATAAAGTTGCAGAAATTCACCGAACAGCAGAGGAGAAAAGGGCAATGATAGAAGCGTACAAGGGAGAAGAATTTCTGGAAATAGAAGAGAAAGCTGCAAAGTTTCGAACTCGTGGATATTCTCCCAGGAAATTTCTTCCATGCTTTGGCAGTTAA 1425 0.4779 MEETGKQRGKEVNEGTSNTVKERSISPLDLGLFDIWNRFRSFLVILSKKVKKKGEFYGGKIQPRTHDNQLSYVGGDTKILAADRSIKFPVFLSKLAALCDTTPQDLAFKYQLPGEDLDPLISVTNDDDLEHMMHEYDRLYRPNSKPVRMRLFLFTLSLNHNSSFSSDRDRFVDALNSTPIPPQPDSIKTPLIIPSNVDYLFDLDKVVAPLTLPPSFAAVKFHNPAPEPIAPQPKCQVRDGISISDHVAGSDPSANSILIQRQIQQEMQRLQIAENEYRRRSEDGFAGGYAAAGGDYYMQKMSGKVRPANVPHPSGYWQEKQFSDKGFQTIVMTTPGVPPVTRSDTKDSIDRDAVLARVESEKRVALIKAWEESEKTKAENRAYKRHNAVVLWENSKKASAEAHLKRIEEKLDRNKAKCVEKMQNKVAEIHRTAEEKRAMIEAYKGEEFLEIEEKAAKFRTRGYSPRKFLPCFGS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04377 474 Pfam PB1 domain 66 154 IPR000270 GO:0005515
Vimu11g04377 474 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g04377 474 Coils Coil 397 439 - -
Vimu11g04377 474 SMART PB1_new 65 156 IPR000270 GO:0005515
Vimu11g04377 474 Pfam Remorin, C-terminal region 362 467 IPR005516 -
Vimu11g04377 474 Coils Coil 260 283 - -
Vimu11g04377 474 Gene3D - 71 155 - -
Vimu11g04377 474 SUPERFAMILY CAD & PB1 domains 66 163 - -
Vimu11g04377 474 PANTHER OS02G0117200 PROTEIN 321 472 - -
Vimu11g04377 474 CDD PB1_UP2 57 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04377 Vimu-Chr11 65013954 65018264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04377 59 177 MAP Kinase Kinase Kinase AT5G57610 42.063 5.37e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04377 - - vra:106767655 818.535