Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu11g04376 | ATGGCTTTCAGCGGTACCCAACAGAAGTGCAAGGCTTGCGATAAAGTTGTTCACTTCGTCGAAAGCTTATCTGCCGATGGGATCTCTTATCACAAAAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTGGCGATAAGCAACTACTGCTCCGGAGATGGAATTTTATACTGCAGGGTGCATTATGAGCAGCTTTTCAAGGAAACTGGCTCCTACCCCAAGAAAGTCAATTCCTCTCCAAGGCCACCAAACGAGCTGAATAGGACACCAAGCAAAATTTCTACCTTCTTCTCTGGGACTCAAGAAAAATGCACAAAATGCAAGAAAACAGTCTATCCGTTGGAAAAGTTGACAGTGGAAGGTGAGTTTTACCACAAATCATGCTTCAGGTGCGCTCACGGAGGGTGTTTCCTGACTCCTTCAACCTATGCTGCTCTTGATGGGTACCTATACTGCAAGCCACACTTCTCTCAGTTGTTCAAGGAGAAGGGCAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAGAAGTGAAATGCTACAAGAGCAAGAGGCTGCGGCTGCGCAGAATCAGAAGACTGGTAATCGCTCAGAGTCGGAAGCAGAAACAGAAACAAAAGCAGAGACAGAAAAAGCAGAGGTAGAAGCAGAGACAGAGACAAACGAAGCAGAACAAGGTGACGAGGAAGCAAAGTCTGACAAAGAGTAG | 711 | 0.4627 | MAFSGTQQKCKACDKVVHFVESLSADGISYHKNCFRCSHCNGLLAISNYCSGDGILYCRVHYEQLFKETGSYPKKVNSSPRPPNELNRTPSKISTFFSGTQEKCTKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKRSEMLQEQEAAAAQNQKTGNRSESEAETETKAETEKAEVEAETETNEAEQGDEEAKSDKE | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu11g04376 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 130 | 168 | - | - | |
| Vimu11g04376 | 236 | MobiDBLite | consensus disorder prediction | 198 | 219 | - | - | |
| Vimu11g04376 | 236 | Gene3D | Cysteine Rich Protein | 98 | 168 | - | - | |
| Vimu11g04376 | 236 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Vimu11g04376 | 236 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Vimu11g04376 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Vimu11g04376 | 236 | PANTHER | OS06G0237300 PROTEIN | 5 | 79 | - | - | |
| Vimu11g04376 | 236 | SMART | lim_4 | 103 | 155 | IPR001781 | - | |
| Vimu11g04376 | 236 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Vimu11g04376 | 236 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Vimu11g04376 | 236 | FunFam | LIM domain and actin-binding 1 | 98 | 168 | - | - | |
| Vimu11g04376 | 236 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Vimu11g04376 | 236 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Vimu11g04376 | 236 | Pfam | LIM domain | 104 | 159 | IPR001781 | - | |
| Vimu11g04376 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 75 | - | - | |
| Vimu11g04376 | 236 | MobiDBLite | consensus disorder prediction | 180 | 197 | - | - | |
| Vimu11g04376 | 236 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 96 | 129 | - | - | |
| Vimu11g04376 | 236 | ProSiteProfiles | LIM domain profile. | 102 | 162 | IPR001781 | - | |
| Vimu11g04376 | 236 | MobiDBLite | consensus disorder prediction | 180 | 236 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu11g04376 | Vimu-Chr11 | 65012062 | 65013214 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Vimu11g04376 | LIM | 5.1e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu11g04376 | - | K09377 | vun:114179495 | 387.111 |