Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04371 ATGACACGGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAGTACATCTCAACGGGTCCCCCCAATATATGTTCTTATTCTCTGCCCTACAAGAGAACTTGCTAGTCAAATTGCCGCTGTAGCAAATGTTCTGCTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGCCTCGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATCGAGAATAAGTCTGGAATATCTCTGCGATTAATGGGCTTGCGGATGCTTGTACTTGATGAAGCTGATCATTTACTCGACTTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGATTGTTTGCCCCGTCAAAGGCAATCTTTACTGTTTTCTGCAACCATACCAAAGGAGGTACGTCGCATATCCCAGCTTGTTTTGAAAAGGGAACACAAGTATGTTGATACAGTTGGAATGGGTTGCGTGGAAACTCCTGTTAAGGCAAGTTACAACAACCACTGTCACACTCTAAAATTTGCACATGTAAATTAG 579 0.4231 MTRLPAIETVLKAMSSSTSQRVPPIYVLILCPTRELASQIAAVANVLLKYQDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVKASYNNHCHTLKFAHVN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04371 192 FunFam Putative LRR receptor-like serine/threonine-protein kinase 3 98 - -
Vimu11g04371 192 PANTHER RNA HELICASE 4 165 - -
Vimu11g04371 192 SMART ultradead3 2 178 IPR014001 -
Vimu11g04371 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 157 IPR027417 -
Vimu11g04371 192 Gene3D - 3 163 IPR027417 -
Vimu11g04371 192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 162 IPR014001 -
Vimu11g04371 192 Pfam DEAD/DEAH box helicase 4 150 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04371 Vimu-Chr11 64995945 64997225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04371 28 158 Eukaryotic Initiation Factors Gene Family AT1G72730 39.695 5.20e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04371 - - vun:114177584 327.791