Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04366 ATGCCTCAGGGAACCCTTGAAGTTTTTCTTGAATATGCCAAAGGCCTTGAGAACACAGATTTTCTCTCAGCTAACATGGACCCTTATGTGATCCTCACATGTCGCACCCAAGAACAAAAAAGTAGTGTTCAATCAGGTAAAGGAAGTAATCCAAAGTGGAATGAAAATTTCATATTCAACGTTTCTGAAGGCGTTAACGAACTGAGATTAAAGATCATGGACAGTGATAATATGTCTACAGATGATATAGTGGGAGAAGTTACCATTACGTTGGAGGACCTGTTCAAGGAAGGGAGCATTCCACCAACTTCATACAATGTTGTGAAGGATGACCCGTCAGGTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTCTTATTTTGTTTATCATGGAACGCGGCATGGAGGAAGATTTTGGGGGATGGAAGGAGTCCAATTGCATACACTAA 483 0.3561 MPQGTLEVFLEYAKGLENTDFLSANMDPYVILTCRTQEQKSSVQSGKGSNPKWNENFIFNVSEGVNELRLKIMDSDNMSTDDIVGEVTITLEDLFKEGSIPPTSYNVVKDDPSGIIIIIIIIIIIIIIIIIIIIIFLILFIMERGMEEDFGGWKESNCIH 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04366 160 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vimu11g04366 160 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 117 IPR035892 -
Vimu11g04366 160 Gene3D C2 domain 2 120 IPR035892 -
Vimu11g04366 160 SMART C2_3c 5 103 IPR000008 -
Vimu11g04366 160 Pfam C2 domain 4 98 IPR000008 -
Vimu11g04366 160 PANTHER C2 DOMAIN-CONTAINING 1 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04366 Vimu-Chr11 64970889 64972346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04366 4 94 C2H2 Transcription Factor Family AT4G21160 34.066 4.71e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04366 - - ini:109155945 177.178