Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04359 ATGGACTGGAATCTGAAAGCAGCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAGTGGAAGGCTCAAGCAGATATGGAATGTTTACAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGACCAAATCCAAAATCACATCCTCATCTTCATCTTCTGGCTCATCTAAGAGAGCTCGTGCCCTTGGCAACGCCACACAGACAGTGTCATGTCTTGTCGATGGCTGCCACTCTGATCTCAGTAACTGCAGGGACTATCACAGGCGCCATAAGGTCTGCGAAGTTCATTCCAAAACTGCACAAGTCACAATCGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCATTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACAGACGGAGAAGAAAGCCCCAAGCAGAACCTCTAACGCGATTTGGAGCAGACATTTCCTCAGGATCCCCACATACCTACACAAATCTTAAGACAGGTACCCAGTTGCTACCTTTCTCAAGTTCACACGTATACCCATCGACTACCGTGATGAATCCCACATGGGGTGGCATTGTTGCTTCTGGTGATGTTAGGATTCATGGACACAACCAACAAGGTGAGCTTTTTCTTGGAACTTCTCCAACCGGTTATAAAGAAGGGAAACAGTTGGCCTTCCTGCAAGCTGACCACACTCTCAACAACCAAAGCCCACATCTCGCGGGTGCTTCCGTGGGCCAGGCCCATATGTTTCTGAGGAGCGGCCCGTATTCTGAAAGTAGTGGGCTGAGGTGTAAAATGTTGTGCGATAGCCTAACGAGCTCGGTCCACGACTCCTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCAGATAGTGAACCCGCATTCGCCCCTCATGCAGCCATTGGGCCTGAGCCTGCATGATGGTAACAGCTTGGGGCCCGTGGACCCGGTTTTGGGCCTGAATGGGAGTGACCATTCTTCGTCGATGTATAACATAGGTTCTAATGGATCGCAGGGGAACGAAGCCCCTCCGGTGTTTCCCTTTCAATGGGGATAG 1158 0.5035 MDWNLKAASWDLSEVDQANLPNMETVEGSSRYGMFTSKGEFSVDLKLGQVGNSGTESVLTKSKITSSSSSSGSSKRARALGNATQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPLTRFGADISSGSPHTYTNLKTGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDVRIHGHNQQGELFLGTSPTGYKEGKQLAFLQADHTLNNQSPHLAGASVGQAHMFLRSGPYSESSGLRCKMLCDSLTSSVHDSSSRALSLLSSPQPHSPGNGLSQIVNPHSPLMQPLGLSLHDGNSLGPVDPVLGLNGSDHSSSMYNIGSNGSQGNEAPPVFPFQWG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04359 385 Gene3D - 80 150 IPR036893 GO:0003677|GO:0005634
Vimu11g04359 385 ProSiteProfiles Zinc finger SBP-type profile. 86 163 IPR004333 GO:0003677
Vimu11g04359 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 371 IPR044817 GO:0003677
Vimu11g04359 385 MobiDBLite consensus disorder prediction 305 327 - -
Vimu11g04359 385 SUPERFAMILY SBT domain 87 167 IPR036893 GO:0003677|GO:0005634
Vimu11g04359 385 MobiDBLite consensus disorder prediction 153 179 - -
Vimu11g04359 385 FunFam Squamosa promoter-binding-like protein 14 80 150 - -
Vimu11g04359 385 Pfam SBP domain 89 162 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04359 Vimu-Chr11 64920678 64923047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04359 1 384 SBP-box Gene Family AT5G50670 43.103 1.24e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu11g04359 SBP 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04359 - - gmx:100805328 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04359 11 64920678 64923047 Vimu11g04359 11 64920678 64923047 ECH
Vimu11g04359 11 64920678 64923047 Vimu10g01440 10 15387525 15392244 PCT