Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04356 ATGGACAAAATCTCATCTTCATCTTCATCTTCATCTTCTCCTTCTCCTTCTTACTTTAAACTCCCTCATCATCTTCATCACGTTGCAGAACAAATGAAGCACCGCAGATTTGCATTTCAAACAAGGAGTCAGGTTGATATACTCGACGATGGATATCGCTGGAGAAAGTATGGCGAAAAGTCTGTCAAAAACAATAAATTTCCTAGAAGCTACTACAGATGTTCTTATCGAGGTTGCAATGTGAAGAAACAAATCCAACGACATAGCAAAGACGAAGAGATTGTGGTAACAACCTATGAAGGGACACATTCTCATCCTGTGGAGAAGACAAGTGAAAGTTTCGAGCAAATACTCAGAAACCATCATATATATAGCCTCACTTTATAA 387 0.385 MDKISSSSSSSSSPSPSYFKLPHHLHHVAEQMKHRRFAFQTRSQVDILDDGYRWRKYGEKSVKNNKFPRSYYRCSYRGCNVKKQIQRHSKDEEIVVTTYEGTHSHPVEKTSESFEQILRNHHIYSLTL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04356 128 FunFam WRKY transcription factor 57 34 108 - -
Vimu11g04356 128 ProSiteProfiles WRKY domain profile. 43 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04356 128 Pfam WRKY DNA -binding domain 49 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu11g04356 128 SUPERFAMILY WRKY DNA-binding domain 40 107 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04356 128 Gene3D WRKY domain 35 101 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu11g04356 128 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 111 IPR044810 GO:0003700
Vimu11g04356 128 SMART WRKY_cls 48 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04356 Vimu-Chr11 64899331 64899999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04356 35 125 WRKY Transcription Factor Family AT5G13080 75.824 1.61e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu11g04356 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04356 - - gmx:100127378 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04356 11 64899331 64899999 Vimu11g04356 11 64899331 64899999 ECH