Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04353 ATGTCAGAATCTCGGGCCCCTAAGCGCCCCAAAATAACTAGGGGGGACGATGATTATATGCCGGGAAATATTCTTGAGATCGAGCTTTGTAATTTCATGACGTTTGACTATTTAAAATGCAAACCTGGGCCTCGACTGAATCTTGTAATTGGACCCAATGGCTCTGGTAAGAGTTCGCTTGTATGTGCTATTGCTCTTGGCCTGTGTGGAGAGCCCCAGTTGCTTGGGCGTGCTACAAGTATTGGGGCATATGTGAAGCGTGGAGAAGAATCTGGCTACATTAAGATCACCTTGAGAGGGGACCACAGAAATGAACACATTAGCGTTATGCGGAAAATTAGTACTAATAACAAGTCTGAATGGTTGCTCAATGGAAGTGTGGTGTCTAAAAAGGATGTGGCTGAAACCATTCAAAGGTTTAACATACAAGTCAATAATTTGACCCAGTTTTTACCACAAGACAGGGTCTGTGAGTTTGCCAAGTTAACTCCTGTTCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGACCCTCAACTCCCGGAGCAACATCGAACACTAGTTGATAAAAGCCGTTCATTGAAACATATTGAGTTGTCTCTGGAGAGAAATGAAGGAACCTTAAAACAGTTGAAGGAGCAAAATGCTGAATTAGAGACAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAATCAATGAAAAAGAAGTTGCCATGGCTGAAGTATGATATGAAGCAGGCAGAATACCGGGAAGTTAAGGAGCGTGAGAATGATGCAGCAAAGGCATTGGAGGAAGCTGCAAAGTTATTAAATGATCTTAAAGAACCTATCATGAAACAAAAAGAAGAGAAAGCTTCATTAGATGCAAAATGCAAAAGGGTTAGTCGCATTGTAAATGAGAATGCAAAGAAGAGAATTGAGCTTATGGAGGACGAGCACAAATTGGATGTGGAATTACAAGGAAAATACAAAGAAATGGAAGAATTGAGGAGACAAGAAGAAACACGACAACAAAAACTTGTAAAAGCAAGGGAGGAACTTGCTATTGCTGAAGAAGAACTTGAGAACTTACCCTCATATGTACCTCCCAAGGATGAGCTTCAAAGACTAAAAGCCGAAATCGGTGAGTTGGATTATGCTGCTAATCAAGTGAGGCAGAATAAGTCACAAGCAGAGAATGAAATAAAGCGCAAGAAGTCATTCATGATGCAGAATAAAGAGAGGTTGATGGAAATGGATAATAAAAGTACGAAGTGTTTGCATGTATTGCAAAGGTCAGGGGCTGAAAAAATTTTTGAAGCTTATAAATGGGTCCAAGAACATCAACATGAATTCAATAAGGAGGTTTATGGCCCAGTCTTGGTAGAGGTGAATGTATCAAATAAAGTTCATGCCGCATATCTAGAGGGTCAAGTGGCTCACTACACTTGGAAGTCCTTCATAACACAAGATTCTGGTGATCGAGATCATTTGGTGAAGCACCTGCAGTTCTTTGATGTACCAGTTTTAAATTATACAGGTGATGGTGGCCACCAAAGAGAGCCTTTTGAAATTTCCGAAGATGTGAGTCTGAAACGTGCTCTTGGCATATACTCTCGGCTGGATCAAATTTTTGATGCTCCTATTGCCGTGAAGGAGGTTTTGATTAGCCAGTTTAATCTAGATCATTCATATATCGGATCCAAAGAAACTGATCAGAACGCTGATGAGGTACCAAGATTAGGAATTGTAAATTTGTGGACACCTGAAAATCACTACCGTTGGTCCAAGTCTAGATATGTAAATCATGTCTCTACAGTCGTTGAACAAGTGGAACGCCCACAACTTTTATTGAATAATTTGAATGTTGGTGAAATTGAAAAGCTGCGTTCTCAGCAAAAGGAGCTTGAAGAAGTCGTTGCTAATTTGGAGGAATGTGTTAAAAAGTTTCAAGATGAAGAAAGAAGCTTAGTGAATCAAGCTGCTGATCTTCGTAAGGAGTGGGAAGGCATTAGTATTACAGTACAGAATGAGCGTAAAAAACGTCAAACACTCATTAGTCGTATTGATCAGAGGAAAGGGTTATTAAAAGTGATGGAGGAACGCGATGATTTAGATACTGAGATAGCAAAGCTTGTTCATCAGGCTTCCAAGTATAATATTCAGCGTTTTCGTAATGCAATGGAAATTAAGGATCTTCTTGTTGAAGCTGTGAGTTACAGACGAATTTTTATTGAACAACGTATGGCTTTTATTGAGTTTGATGCAAAGACTGGAGAAATGGATGCCAACTTGAAGCAGCATGAGAATTTTGCTGTGCAAGCATCATTGCACTTCGAAAACTGTAAGAAAGAATCTGAGAACTGTAGACAGAAGCTTACAGATTCCTTGAGGTATGCTAAATCAATTGCTCAGCTTACACCTGAGCTAAAGAAGGAATTTCTCGAGATGCCTACTACAATTGAGGAACTGGAGGCAGCGATCCAGGATACCACTGCTCAAGCCAATTCAATTCTCTTCGTCAATCATAACATATTGGAACAATATAAAGATCGTCAACGGCAGATAGAAGATCTTGCAGCAAAACTGGAAGCAGACAGAAAGGAATGTACACGGTGTTTGGCTGAGTTAAATGACATTAAGGGAAAATGGCTTCCTACGTTGAGAAACCTAGTGGCAAAAATAAATGAAACCTTCAGCTTCAATTTCCAAGAGATGGCCGTTGCTGGAGAAGTTTCGCTAGATGAACATGATATAGATTTTGATCAATTTGGAATACTGATAAAAGTTAAATTCAGAGAAAATGGACAGCTTAAAGTTTTGAGTGCCCATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTGACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGCAAGCAAGCCAAATACCCCCCAGTGCTTCTTACTTACCCCAAAATTGTTACCAGATCTGCAATATAGTGAGGCATGTAGTATATTGAATGTGATGAATGGCCCTTGGATTGAAGAACCCTCGAAGGTCTGGACTACTGGTGATCGATGGAGTATTATCACTGGACTAGTTGGAAACACACTTTGCTAA 3168 0.4025 MSESRAPKRPKITRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGYIKITLRGDHRNEHISVMRKISTNNKSEWLLNGSVVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRTLVDKSRSLKHIELSLERNEGTLKQLKEQNAELETDVERVRQRDELLAKAESMKKKLPWLKYDMKQAEYREVKERENDAAKALEEAAKLLNDLKEPIMKQKEEKASLDAKCKRVSRIVNENAKKRIELMEDEHKLDVELQGKYKEMEELRRQEETRQQKLVKAREELAIAEEELENLPSYVPPKDELQRLKAEIGELDYAANQVRQNKSQAENEIKRKKSFMMQNKERLMEMDNKSTKCLHVLQRSGAEKIFEAYKWVQEHQHEFNKEVYGPVLVEVNVSNKVHAAYLEGQVAHYTWKSFITQDSGDRDHLVKHLQFFDVPVLNYTGDGGHQREPFEISEDVSLKRALGIYSRLDQIFDAPIAVKEVLISQFNLDHSYIGSKETDQNADEVPRLGIVNLWTPENHYRWSKSRYVNHVSTVVEQVERPQLLLNNLNVGEIEKLRSQQKELEEVVANLEECVKKFQDEERSLVNQAADLRKEWEGISITVQNERKKRQTLISRIDQRKGLLKVMEERDDLDTEIAKLVHQASKYNIQRFRNAMEIKDLLVEAVSYRRIFIEQRMAFIEFDAKTGEMDANLKQHENFAVQASLHFENCKKESENCRQKLTDSLRYAKSIAQLTPELKKEFLEMPTTIEELEAAIQDTTAQANSILFVNHNILEQYKDRQRQIEDLAAKLEADRKECTRCLAELNDIKGKWLPTLRNLVAKINETFSFNFQEMAVAGEVSLDEHDIDFDQFGILIKVKFRENGQLKVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEEPSKVWTTGDRWSIITGLVGNTLC 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04353 1055 Gene3D - 847 1025 IPR027417 -
Vimu11g04353 1055 Gene3D - 23 227 IPR027417 -
Vimu11g04353 1055 Pfam RecF/RecN/SMC N terminal domain 25 996 IPR003395 -
Vimu11g04353 1055 Coils Coil 194 228 - -
Vimu11g04353 1055 Coils Coil 372 399 - -
Vimu11g04353 1055 Coils Coil 844 867 - -
Vimu11g04353 1055 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1047 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vimu11g04353 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1006 IPR027417 -
Vimu11g04353 1055 Coils Coil 328 358 - -
Vimu11g04353 1055 Coils Coil 251 278 - -
Vimu11g04353 1055 Coils Coil 624 665 - -
Vimu11g04353 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 289 IPR027417 -
Vimu11g04353 1055 FunFam Structural maintenance of chromosomes 5 851 1022 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04353 1 1044 Structural Maintenance of Chromosomes family AT5G15920 62.261 0.0 1301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04353 K22803 - gmx:100778678 1830.07